Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0596 ATGTCTGCAATGTCTGAAACAAGGTCGCCGCTGCCGTTGCTCTTCCGGCGGCACTCAAGCGGCGAGATAAGGAACTTGACGTCGGTTTCCAGCAGTCTCTTGCCGGCGTTCGGAACAGTTGTGAACGATGGATACTCAAACCTGAACAAGTTCGTTATAGTTCCCTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGCATCTCCTTTTGAACTCGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTCGCCCTTGATATCCTCTTGACCTTCTTCGTGGCTTACTTGGATAAGTCCACCTATCTCCTCGTTGATGATCACAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACATAGCCTCCACTCTGCCATTTCAGGCACTATACAGAATTTTCACTGGGAAGATGAACGGCAATGAGGTATTTGGCTTCCTCAACTTGCTTCGGTTCTGGAGACTAAGGCGTGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTACTTTCTGACAAGACTTGTCAAACTAATTTGTGTGACACTGTTGGCAGTGCACTCAGCTGGTTGCTTCTACTACTGGCTAGCAATTCATCATACAGATTCAGAAAATACATGGATTGGAATTGAAGTCCCGGATTTCGAGAGCAGAAGCATCTGGCTCGGCTACACCTATTCGATATACTGGTCCATTGTCACACTCGCTACTGTTGGTTACGGGGACTTGCATGCAGTTAATACAGGGGAGAAGATTTTTAGTATCTGCTACATGCTGTTCAACATTGGCCTCACTGCTTATTTGATTGGAAACATGACAAATCTCATCGTTCACAGTTGTATCCGAACATTTATCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAGGAAGAGGTGTTGGAGGATTTACCTAAAGCAATTAGATCCAGTATTGCCCAGCACCTTTTTCGCCAAACAGTTGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTGTCGTCCAACTGGTGTCTGAGATGAAAGCGGAGTACTTTCCACCTAAAGTTGATATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCGTACAAGAATGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCAAAGATGGCAGGGGAAATTGCTGTAATGTTGAATATCCCACAACCATTTACAGTGAGAACTAGAAGACTCTCCCAGGTCATCAGGATCAGCCATCATCATTTTAAGCAAATTGTACAACCTAACAATGACGATGGAAAAAACCTTTTCACCAACTTCGCTGAGCACTTGAAGAAGTTAAAAAAAGAGGAGCAAGATGAAATACCCTACTTCTCAGAATTGCTGGAAGACCTAGATACGGAGCATACAGAACCGAATGAGACACAAAATCAGAGAGCACAAAATTATCATGGAGATCAAAAAATGGAAGGAGTACCGGAAGCATCTAGACCATTGCCACCTACAGCTCCCATCAGGGTGATAATTCATGATCACCATCCAGATGAAAGTACAAAAGATGGCAACAGCATGGGAAAACTGATACTTCTGCCTGAATCAACTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGAAAGAGAGGGAGCTCAATTCTCATGGCTGATGGCTCTACAGTTGAAGACTTGAATGTTTTAAGAGAGGGTGATCGTTTATTCTTTGTTTGA 1896 43.72 MSAMSETRSPLPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVNDGYSNLNKFVIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKSTYLLVDDHKKIAVRYLTSLWFPMDIASTLPFQALYRIFTGKMNGNEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFLTRLVKLICVTLLAVHSAGCFYYWLAIHHTDSENTWIGIEVPDFESRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSICYMLFNIGLTAYLIGNMTNLIVHSCIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKGLSEDLVVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKNGTEQILSKLESPKMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQIVQPNNDDGKNLFTNFAEHLKKLKKEEQDEIPYFSELLEDLDTEHTEPNETQNQRAQNYHGDQKMEGVPEASRPLPPTAPIRVIIHDHHPDESTKDGNSMGKLILLPESTEELFGLAEKRFGKRGSSILMADGSTVEDLNVLREGDRLFFV 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3822867 3831547 - MC11g0494 Mch11g0596 679530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0596 631 Gene3D - 62 304 - -
Mch11g0596 631 CDD CAP_ED 380 485 IPR000595 -
Mch11g0596 631 Pfam KHA, dimerisation domain of potassium ion channel 562 630 IPR021789 -
Mch11g0596 631 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch11g0596 631 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch11g0596 631 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch11g0596 631 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch11g0596 631 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch11g0596 631 PANTHER POTASSIUM CHANNEL AKT1 22 543 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Mch11g0596 631 SUPERFAMILY cAMP-binding domain-like 309 500 IPR018490 -
Mch11g0596 631 ProSiteProfiles cAMP/cGMP binding motif profile. 380 499 IPR000595 -
Mch11g0596 631 Gene3D Jelly Rolls 345 510 IPR014710 -
Mch11g0596 631 FunFam Potassium channel KAT3 62 304 - -
Mch11g0596 631 MobiDBLite consensus disorder prediction 524 558 - -
Mch11g0596 631 Pfam Cyclic nucleotide-binding domain 400 483 IPR000595 -
Mch11g0596 631 ProSiteProfiles KHA domain profile. 562 631 IPR021789 -
Mch11g0596 631 Pfam Ion transport protein 60 303 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g0596 631 FunFam Potassium channel KAT2 368 504 - -
Mch11g0596 631 SMART cnmp_10 380 497 IPR000595 -
Mch11g0596 631 SUPERFAMILY Voltage-gated potassium channels 55 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0596 Mch-Chr11:3822867 Mch3g1015 Mch-Chr3:13843360 2.49E-173 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0596 K21867 - csv:101215177 1129.78