Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0600 ATGTCTGCTCCATCCGAAACTCCGATCGAGGAGCCGCCGTCCGCCGGAGCCGTCAGCAAGAAGGCTGCCAAGAAGGAGGCTGCCAAGCAGGAAAAGCTGCGCCGTCGCCAGGAAGCAGCGGCCGAAGCTGCCATTTCGTCTCTCAACGTCGAGGAGGATCCACTCTCCGCTAACTATGGCGACGTTCCGCTCTCCGACCTCCAATCCAAGGAGGCTAAGAATATCGAGAACTGGACTCAGGTTGGCTCTTTGACGGAGGTGCTTAAAGATAAGTATGTGCTTCTGCGTGGACGGATTCAGACGATCCGTGCAGTTGCTAAGAAGATGGCGTTTTTGGTGATGAGAGAAAAGGGATTCACTGTTCAATGCGTGGTGTCGGAGCAGCCTGAGGTTGTTAGTCGCCAGATGGTGAAGTATGTGGTTGGCTTGAGCCGCGAGTCCATTGTCGATGTTGAAGGAGTCGTGTCCGTGCCCAATGTTGCCATTAAAGGTGCTACGCAGCAGGTGGAGATTCAAGTGAGGAAAGTATATTGCATCAGTAAGGCAATGCCGAGTCTGCCTATAAATATTGAAGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAAGCATTGCAGGCTGGTGAGCAACTAGTACGTGTTAATCAGGATACGCGGTTAAACTATAGAGTCCTTGATATACGAACACCAGCTAATCAAGGAATTTTCCGCATTCAATGTCAAGTTGGAACCATATTTAGACAATTTCTGCTGTCCGAAGGCTTTGTTGAAATCCATACACCAAAGTTGATTGGGGGCTCCAGTGAAGGTGGTGCTTCTGTTTTTAAGTTGGATTACAAAGGCCAACCCGCCTGCCTGGCTCAGTCACCTCAGCTACATAAGCAAATGGCAATATGTGGTGATTTTGGGCGTGTATTTGAGATTGGTCCTGTTTTCAGAGCAGAGGATTCATTCACGCACAGGCATCTATGTGAATTCACAGGACTTGATGTTGAAATGGAACTTAAGACTCATTATTCTGAGGTCATGGATATTGTGGACCGTTTATTTGTCTCAATGTTTGACAGTTTGAATCAAAATTGTAAGAAGGAGCTTGAAGCAGTAGATAGACAGTATCCCTTTGAACCTTTGAAGTACTTGCGAAATACTCTAAGGCTTACATTTGAGGAAGGAGTTCAGATGCTGAAGGATGCTGGCGTTCAAATCGATCCTCTTGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGGCAGCTCGTCTTAGAGAAATATGGCACGGAGTTCTACATTCTTCACCGCTATCCTTTGGCGGTTAGACCATTCTATACAATGCCTTGCCATGATAACCCAACTTATAGTAACTCGTTTGACGTATTTATTCGAGGGGAAGAAATCATTTCCGGTGCTCAGCGTGTTCACGTACCCGAATTTTTGGCAGAGCGAGCTCAAGCATGTGGGATCGAGGTAAAGACCATAGAAACGTACATCGATTCATTCAGATATGGTGCTCCTCCTCACGGTGGTTTTGGAGTTGGTTTGGAGCGCGTGGTGATGCTTTTCTGTGGTTTGAATAACATTCGCAAGACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAG 1623 47.07 MSAPSETPIEEPPSAGAVSKKAAKKEAAKQEKLRRRQEAAAEAAISSLNVEEDPLSANYGDVPLSDLQSKEAKNIENWTQVGSLTEVLKDKYVLLRGRIQTIRAVAKKMAFLVMREKGFTVQCVVSEQPEVVSRQMVKYVVGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVRKVYCISKAMPSLPINIEDAARSEVEIEKALQAGEQLVRVNQDTRLNYRVLDIRTPANQGIFRIQCQVGTIFRQFLLSEGFVEIHTPKLIGGSSEGGASVFKLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMELKTHYSEVMDIVDRLFVSMFDSLNQNCKKELEAVDRQYPFEPLKYLRNTLRLTFEEGVQMLKDAGVQIDPLGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIEVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3876340 3880983 + MC11g0497 Mch11g0600 679534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0600 540 Gene3D - 51 185 IPR012340 -
Mch11g0600 540 FunFam Aspartate--tRNA ligase, cytoplasmic 187 540 - -
Mch11g0600 540 Pfam tRNA synthetases class II (D, K and N) 214 534 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch11g0600 540 CDD AspRS_cyto_N 92 192 - -
Mch11g0600 540 PRINTS Aspartyl-tRNA synthetase signature 455 471 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch11g0600 540 PRINTS Aspartyl-tRNA synthetase signature 495 509 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch11g0600 540 PRINTS Aspartyl-tRNA synthetase signature 285 297 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch11g0600 540 PRINTS Aspartyl-tRNA synthetase signature 302 315 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch11g0600 540 NCBIfam aspartate--tRNA(Asn) ligase 87 540 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Mch11g0600 540 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 235 532 IPR006195 -
Mch11g0600 540 SUPERFAMILY Class II aaRS and biotin synthetases 210 539 IPR045864 -
Mch11g0600 540 CDD AsxRS_core 212 536 - -
Mch11g0600 540 PANTHER ASPARTYL-TRNA SYNTHETASE 7 540 IPR004523 GO:0000166(InterPro)|GO:0003723(PANTHER)|GO:0004815(PANTHER)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006422(InterPro)|GO:0006422(PANTHER)|GO:0017101(PANTHER)
Mch11g0600 540 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 76 540 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Mch11g0600 540 Coils Coil 20 42 - -
Mch11g0600 540 MobiDBLite consensus disorder prediction 1 35 - -
Mch11g0600 540 SUPERFAMILY Nucleic acid-binding proteins 57 184 IPR012340 -
Mch11g0600 540 Gene3D Bira Bifunctional Protein; Domain 2 187 540 IPR045864 -
Mch11g0600 540 FunFam Aspartyl-tRNA synthetase, cytoplasmic 55 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0600 K22503 - - csv:101222217 975.311
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36