Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0615 ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGTAAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAAGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTGAAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAAGACGGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACATGCAAATATTCGCATTTTCCGTAAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGGTACTGATTGCTGGAGCTGATGTTGATGGTCTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAACGCCCTGGTGCAGAGTGGCTCGAGTGGATACCAGACAGCATCTTCAGAACTATCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCATAG 834 42.93 MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3963009 3967938 - MC11g0512 Mch11g0615 679549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0615 277 Gene3D - 212 277 IPR036388 -
Mch11g0615 277 Gene3D - 29 160 IPR012340 -
Mch11g0615 277 MobiDBLite consensus disorder prediction 1 31 - -
Mch11g0615 277 CDD RPA2_DBD_D 62 155 - -
Mch11g0615 277 FunFam replication protein A 32 kDa subunit A-like 25 159 - -
Mch11g0615 277 MobiDBLite consensus disorder prediction 1 29 - -
Mch11g0615 277 Pfam Replication protein A C terminal 177 270 IPR014892 -
Mch11g0615 277 Pfam OB-fold nucleic acid binding domain 63 136 IPR004365 GO:0003676(InterPro)
Mch11g0615 277 FunFam Replication protein A 32 kDa subunit 208 277 - -
Mch11g0615 277 PANTHER REPLICATION PROTEIN A-RELATED 9 275 IPR040260 GO:0000724(PANTHER)|GO:0000781(PANTHER)|GO:0003697(PANTHER)|GO:0005662(PANTHER)|GO:0006260(PANTHER)|GO:0006289(PANTHER)|GO:0035861(PANTHER)
Mch11g0615 277 SUPERFAMILY Winged helix DNA-binding domain 213 275 IPR036390 -
Mch11g0615 277 SUPERFAMILY Nucleic acid-binding proteins 32 158 IPR012340 -
Mch11g0615 277 PIRSF RPA32 1 277 IPR014646 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0615 Mch-Chr11:3963009 Mch6g0522 Mch-Chr6:3532218 1.64E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0615 K10739 - csv:101220176 444.506