Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0617 ATGCCGGGCCTAACCTGTAACGCCTGCAACAAAGAATTCAATGACGCAGAGGAGCAAAAGCTCCACTACAAGTCCGAATGGCACCGCTACAATCTCAAGCGCAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCCTTATTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGATTGACAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTGGCAAAGCCTATAGGAGTGCCAAGACTCATGCCCAACATCTTAAATCTAGGAGTCACATCGTCCGAGCTTTGCAAGGAGAACACGACCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCGAATAAGCCTCCTCATCAAAGTGAGGAGGAAAAGAGTGAGGACGAGTGGGAAGAAGTTGACCCTGATGAAGACTTGGTTATTGATGCTACAAAGTCCCTAACTGATTTATCTGTTAATGACTCAAATAATGATGTGGATGGTAGTGAGGATGATGGTTATGAGGCCATTGAGGTGGATTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTATTCCCGACGTTGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTCGGCCTGAAGGTGATGAAGGATTTCAGGTGTCTGTACTGCAATGATAGGTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCTAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGATGATAATGAGGAAGTAGAGTTGGAGGAATTCTATGATTACAGCAGCAGTTATGCGGATGGAAGTGGCAATCAGCTGGTACCATCAGGTGCTGCGGCCAATTCTGTTGAACTTGGCAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAAAAATAGTGATGGGCAATCGACCAAGACACTTGGTTCGAGGCAGTTTCTGCGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGTGGCCATAACTGCAGTATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCAAGAGAGAGGACGATTAGGATGAAAGTGATGAAAGAAATCAATCGAACCGGGGTGGAAGCCATGCGTACGAAGATCGGATTGAAGAACAACGTGATCCGAAACCTGCCCAAGAATGTTCCATTCTAG 1233 45.01 MPGLTCNACNKEFNDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQEIDKSRETSMLYSCGLCGKAYRSAKTHAQHLKSRSHIVRALQGEHDQEVEKPIIKPLPQRISNKPPHQSEEEKSEDEWEEVDPDEDLVIDATKSLTDLSVNDSNNDVDGSEDDGYEAIEVDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVMKDFRCLYCNDRCLPFSSLEAVRKHMEAKSHCKVHYGDGDDNEEVELEEFYDYSSSYADGSGNQLVPSGAAANSVELGSGGAELILVQKNSDGQSTKTLGSRQFLRYYRQKPRPSPANDVAITAVLAARYKSMGLATVQSRERTIRMKVMKEINRTGVEAMRTKIGLKNNVIRNLPKNVPF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3976914 3980341 - MC11g0514 Mch11g0617 679551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0617 410 PANTHER ZINC FINGER PROTEIN 622 1 408 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Mch11g0617 410 Pfam Zinc-finger of C2H2 type 69 93 IPR013087 -
Mch11g0617 410 SMART c2h2final6 4 28 IPR013087 -
Mch11g0617 410 SMART c2h2final6 69 93 IPR013087 -
Mch11g0617 410 SMART c2h2final6 182 205 IPR013087 -
Mch11g0617 410 SMART c2h2final6 233 260 IPR013087 -
Mch11g0617 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 93 IPR013087 -
Mch11g0617 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Mch11g0617 410 SUPERFAMILY beta-beta-alpha zinc fingers 58 99 IPR036236 -
Mch11g0617 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Mch11g0617 410 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Mch11g0617 410 SUPERFAMILY beta-beta-alpha zinc fingers 168 241 IPR036236 -
Mch11g0617 410 MobiDBLite consensus disorder prediction 111 140 - -
Mch11g0617 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch11g0617 410 Pfam C2H2 type zinc-finger (2 copies) 184 286 IPR041661 -
Mch11g0617 410 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42586 PF12756 zf-C2H2_2 4.40E-25 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0617 K14816 - csv:101219700 674.085