Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0617 | ATGCCGGGCCTAACCTGTAACGCCTGCAACAAAGAATTCAATGACGCAGAGGAGCAAAAGCTCCACTACAAGTCCGAATGGCACCGCTACAATCTCAAGCGCAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCCTTATTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGATTGACAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTGGCAAAGCCTATAGGAGTGCCAAGACTCATGCCCAACATCTTAAATCTAGGAGTCACATCGTCCGAGCTTTGCAAGGAGAACACGACCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCGAATAAGCCTCCTCATCAAAGTGAGGAGGAAAAGAGTGAGGACGAGTGGGAAGAAGTTGACCCTGATGAAGACTTGGTTATTGATGCTACAAAGTCCCTAACTGATTTATCTGTTAATGACTCAAATAATGATGTGGATGGTAGTGAGGATGATGGTTATGAGGCCATTGAGGTGGATTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTATTCCCGACGTTGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTCGGCCTGAAGGTGATGAAGGATTTCAGGTGTCTGTACTGCAATGATAGGTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCTAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGATGATAATGAGGAAGTAGAGTTGGAGGAATTCTATGATTACAGCAGCAGTTATGCGGATGGAAGTGGCAATCAGCTGGTACCATCAGGTGCTGCGGCCAATTCTGTTGAACTTGGCAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAAAAATAGTGATGGGCAATCGACCAAGACACTTGGTTCGAGGCAGTTTCTGCGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGTGGCCATAACTGCAGTATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCAAGAGAGAGGACGATTAGGATGAAAGTGATGAAAGAAATCAATCGAACCGGGGTGGAAGCCATGCGTACGAAGATCGGATTGAAGAACAACGTGATCCGAAACCTGCCCAAGAATGTTCCATTCTAG | 1233 | 45.01 | MPGLTCNACNKEFNDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQEIDKSRETSMLYSCGLCGKAYRSAKTHAQHLKSRSHIVRALQGEHDQEVEKPIIKPLPQRISNKPPHQSEEEKSEDEWEEVDPDEDLVIDATKSLTDLSVNDSNNDVDGSEDDGYEAIEVDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVMKDFRCLYCNDRCLPFSSLEAVRKHMEAKSHCKVHYGDGDDNEEVELEEFYDYSSSYADGSGNQLVPSGAAANSVELGSGGAELILVQKNSDGQSTKTLGSRQFLRYYRQKPRPSPANDVAITAVLAARYKSMGLATVQSRERTIRMKVMKEINRTGVEAMRTKIGLKNNVIRNLPKNVPF | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3976914 | 3980341 | - | MC11g0514 | Mch11g0617 | 679551 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0617 | 410 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 408 | IPR040025 | GO:0030687(PANTHER)|GO:0042273(PANTHER) | |
Mch11g0617 | 410 | Pfam | Zinc-finger of C2H2 type | 69 | 93 | IPR013087 | - | |
Mch11g0617 | 410 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
Mch11g0617 | 410 | SMART | c2h2final6 | 69 | 93 | IPR013087 | - | |
Mch11g0617 | 410 | SMART | c2h2final6 | 182 | 205 | IPR013087 | - | |
Mch11g0617 | 410 | SMART | c2h2final6 | 233 | 260 | IPR013087 | - | |
Mch11g0617 | 410 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 69 | 93 | IPR013087 | - | |
Mch11g0617 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
Mch11g0617 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 99 | IPR036236 | - | |
Mch11g0617 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
Mch11g0617 | 410 | Pfam | Zinc-finger double-stranded RNA-binding | 5 | 29 | IPR022755 | - | |
Mch11g0617 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 168 | 241 | IPR036236 | - | |
Mch11g0617 | 410 | MobiDBLite | consensus disorder prediction | 111 | 140 | - | - | |
Mch11g0617 | 410 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Mch11g0617 | 410 | Pfam | C2H2 type zinc-finger (2 copies) | 184 | 286 | IPR041661 | - | |
Mch11g0617 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 93 | IPR013087 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42586 | PF12756 | zf-C2H2_2 | 4.40E-25 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0617 | K14816 | - | csv:101219700 | 674.085 |