Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0619 TTCACTGCTCAACAACTATATAGTTTCACAAGCAATTATTCAGCACCACTTGGGTCTGGAGGATTCGGCATGGTCTACAAAGGACAGTTCCCAAATGGGATGAAGATTGCTGTGAAGATTTTGAAGAGGGACTCGGACAGGCAGGCGGAGGAGCAATTTATGGCTGAGGTAGGAACAATTGGCAGAACTTACCATATAAACTTGGTTAGGCTTTATGGTTTTTGTTATGATCAATATATGGGTGCACTGGTATTTGAGTACATGGAAAATGGATCTCTGGATAAGTACTTGTTTGGCAAAAAACAAGAAATTGAATGGGGAAAGTTACATGATGTAGCCATTGGGACTGCTAAAGGCCTTGCTTACTTACATGAGGAATGCCAACAGAGAATCATTCATTATGACATAAAGCCTGCTAACATTCTACTGGATGCAAATTTCTCTCCCAAAGTTGGTGATTTTGGACTTGCCAAGCTTTGCAACAGGGATAGCACCCATATGTCTCTCACTGGCTATCGAGGCACCCCCGGATACTCCGCCCCAGAGTTCTTATTAAGTAATTTTCCAATTACGCACAAGTGTGATGTTTACAGCTTCGGAATGGTATTGTTTGAGATCATTGGAAGAAAAAGGAATGCTGGTGTTACTCCTTCTGGGAACCCTGATTGGTTTCCACAACACGTGTGGGAGGAATACAGAAAGTTAAAATTGGAAGAAATGACTCGAAGTTGTGGAATTGAAGAGAAAGATAAAGAGAGGGCGAGCAGAATGTGCAAGGTGGCTCTGTGGTGCGTTCAAGATTCCCCCGACGAGCGGCCGCCGATGAGTGCAGTGGTGAAGATGCTAGAGGGAGGAGTAGAGATAATGCCGCCACCAAAGCCA 882 44.1 FTAQQLYSFTSNYSAPLGSGGFGMVYKGQFPNGMKIAVKILKRDSDRQAEEQFMAEVGTIGRTYHINLVRLYGFCYDQYMGALVFEYMENGSLDKYLFGKKQEIEWGKLHDVAIGTAKGLAYLHEECQQRIIHYDIKPANILLDANFSPKVGDFGLAKLCNRDSTHMSLTGYRGTPGYSAPEFLLSNFPITHKCDVYSFGMVLFEIIGRKRNAGVTPSGNPDWFPQHVWEEYRKLKLEEMTRSCGIEEKDKERASRMCKVALWCVQDSPDERPPMSAVVKMLEGGVEIMPPPKP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3987280 3988161 + MC11g0515 Mch11g0619 679553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0619 294 Gene3D Transferase(Phosphotransferase) domain 1 88 288 - -
Mch11g0619 294 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 88 292 - -
Mch11g0619 294 ProSitePatterns Protein kinases ATP-binding region signature. 17 39 IPR017441 GO:0005524(InterPro)
Mch11g0619 294 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Mch11g0619 294 SMART serkin_6 11 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0619 294 Pfam Protein tyrosine and serine/threonine kinase 15 282 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0619 294 PIRSF ILK 12 289 - -
Mch11g0619 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0619 294 SUPERFAMILY Protein kinase-like (PK-like) 4 282 IPR011009 -
Mch11g0619 294 ProSiteProfiles Protein kinase domain profile. 11 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0619 294 PANTHER OS07G0415500 PROTEIN 1 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0619 Mch-Chr11:3987280 Mch11g0621 Mch-Chr11:3996378 3.26E-185 dispersed
Mch7g0159 Mch-Chr7:1993113 Mch11g0619 Mch-Chr11:3987280 2.01E-13 dispersed
Mch11g0618 Mch-Chr11:3981173 Mch11g0619 Mch-Chr11:3987280 3.26E-80 tandem
Mch11g0619 Mch-Chr11:3987280 Mch11g0620 Mch-Chr11:3990558 7.06E-122 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77053 PF07714 PK_Tyr_Ser-Thr 6.20E-48 CL0016 Mch PK