Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0630 ATGGCGGTCGATTTGATGAGTTTTCCAAAGATGGATGACCAGATGGCCATACAGGAAGCGGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAATCACGTCGATTGCTCTGACCTAACGGACGCCACCGTTTCGAAGTTCAAGAAGGTGATCTCCCTCCTCAATCGGACCGGCCACGCCCGCTTCCGGCGAGGTCCGGTTTCTTCTACCTCTTCTTCATCCTCCGGTTCATCTGCTCATCTATCTGTACCTCAAAATCACGCGATGAATCTCACTCCCACTCCGTTTACTTCTCCGACAACTGTGCCTCCTGCGCCGTTCGCAGCTCCGGCGACCATCGCTCAGCCGCAGGCGAAAGTTGCTGCGGCGGCGAACTTCATCCAGCCCCAGCATCAGAGTATGACTCTCGATTTCACGAGGCCGAATATTTTGAACTCTAATCCTAAGGGAACGGAGTTGGAATTTTCCAAGGAGACATTCAGTGTCTCGTCGAGCTCTTCGTTTATGTCCTCTGCCATCACCGGAGACGGCAGCGTGTCCAACGGAAAGTTAGGAACGTCGATCTTCCTGGCACCGGCGCCGACTGCCTCCGGAGGAAAGCCTCCTCTATCGGCGGCTCCGTACAAGAAGAGGTGTCACGAACACGATCACTCTGAAGACATGTCCGGAAAATTCTCCGGCTCTTCCTCTGCCTCCGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCAAAAATCGCCGATATTCCACCGGACGAGTATTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGCTGATCGTAACGTACGAAGGGGAGCACCGCCACACGCCGAGCGCGTTGCCGGAGAATATGGCCGCCGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1053 53.66 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSVPQNHAMNLTPTPFTSPTTVPPAPFAAPATIAQPQAKVAAAANFIQPQHQSMTLDFTRPNILNSNPKGTELEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDMSGKFSGSSSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTPSALPENMAAGVALVFEST 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4053570 4055956 - MC11g0524 Mch11g0630 679564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0630 350 MobiDBLite consensus disorder prediction 226 252 - -
Mch11g0630 350 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0630 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 332 IPR044810 GO:0003700(InterPro)
Mch11g0630 350 MobiDBLite consensus disorder prediction 74 106 - -
Mch11g0630 350 Pfam WRKY DNA -binding domain 274 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0630 350 FunFam WRKY transcription factor 65 256 333 - -
Mch11g0630 350 SUPERFAMILY WRKY DNA-binding domain 270 331 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0630 350 MobiDBLite consensus disorder prediction 72 113 - -
Mch11g0630 350 Pfam Plant zinc cluster domain 219 270 IPR018872 -
Mch11g0630 350 SMART WRKY_cls 272 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0630 350 Gene3D WRKY domain 242 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0630 Mch-Chr11:4053570 Mch6g0480 Mch-Chr6:3169097 2.13E-92 dispersed
Mch11g0630 Mch-Chr11:4053570 Mch11g0325 Mch-Chr11:2005560 2.22E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42587 PF03106 WRKY 6.70E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0630 - - - 0.0