Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch11g0634 | ATGGAGTTGAAGAAAGGGAAATTCGTGCGGTTTTACTCCGATGAGAACCAGAATCTAGAGCTCCCATGGGAGAAAAACGATCCGAAGAGGCGCATTCATCTTCCATTGCCAGTGTTCAAAGTTGGGACTGCGCCGTTAGCGAAATTAGACGCTGGGGTTGGGGATAAAACTAAAATTAACTACGGCAATCCAGATTTAGGGAGGTCCAAGATTTTCGTGGAAAGCAGTGGGCCATTTTTTAAGAGGATTCTTAACCCAGAAAGTGAAACCATACTGAGATGGAACAGGGTTTTCCTCTTCTCTTGCCTGACAGCTCTTTTCGTTGATCCACTGTTCTTCTACCTTCCATCAGTGATTCACCATCACAGATCATCTTGTATGACAACTGATTTCAACTTGGGAATTGTTGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTGTTTCACATGGTTTTGAAATTCCGGATGGCTTATGTATCACCAATTTCAAGAGTTTTTGGAAAAGGTGAACTCGTCACTGATCCAAAGATGATTGCAAAACGCTACTTAAAGTCGGATTTCTTTATAGATCTCATTGCTTCTCTGCCTCTTCCCCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCGGACCATACAAACAATACTCTTGTGTTGATAGTCTTGCTTCAGTATATTCCAAGATTCTACCTCATTTTCCCATTAAGCTCCCACATTATCAAAACTACTGGTGTTGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCGTGGTACTTACTGTCGGTGGAGCGCCATGCCATGTGCTGGAAGTTGACCTGCAGGAGGGAATTAAGTCCTGTGAAATGTCTTCTTGACTATCTGGATTGTGGTACTCTAGATTATGTAGATCGCAGGATATGGGAACTAAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGAAAACGTTTTCAATTACGGGATATTTGCAGATGCGATCTCGAAAAATGTCATATCCTCCAAGTTCCTTCAGAAGTATTTCTATTGTCTATGGTGGGGCTTGCAGAACTTGAGTTCATATGGTCAGGGTTTGGACACAACCACCTTCATTGGAGAAACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGATTGGAGGAGTGCAGGGTCAAGCGCCGTGATACCGAGGAATGGATGAAACACCGACAGCTCCCTCAAGATTTGCAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCGATCTTACAAGGCCTTCCAACAGATCTTCGTCGAGATATCCAGCGTCACCTCTGCCTCGATCTCGTTCGACGAGTTCCATTTTTCGCACAAATGGATGATCAGCTACTTGACGCGATCTGCGAGCGGTTGGCATCGTCTTTATGTACACAAGGTACTTACATTGTTCGTGAAGGAGATCCCGTTACTGAGATGCTTTTTATCATCCGAGGGATGCTTGAGAGCTCCACAACAGATGGAGGACGGTCGGGTTTCTTCAATTCGATAACCTTAAGACCCGGGGATTTTTGTGGGGAAGAGCTTCTTGCTTGGGCACTGCTTCCAAAGTCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAGAGCAATCACGGAAGTTGAAGCCTTTGCCCTGCGGGCAGAGGATCTCAAATTTGTCGCTAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACATACTTTTCGGTTTTATTCGTATCACTGGAGAACGTGGGCTGCTTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGAGGGTCATAGCAAAGTCACTCAGCATGCAGGAGTCTTTCTCGTTGACTCCCAAGAAGCCAGCGGCCGAAGAAGCCGAACAAGAAGAGGAAGAACATAACATTCCACGTTCCAAATACTCTCAAGCAAAACAAAACCTTGGCGTCACAATATTGGCTTCAAGGTTTGCTGCAAACACACGCAGAGGAGCACAAAAACTGAAGGATGTCGAATTATCGAAGCTGCGAAAGCCCGATGAGCCAGACTTTTCAGAAGAACCAGATGATTAA | 2199 | 44.34 | MELKKGKFVRFYSDENQNLELPWEKNDPKRRIHLPLPVFKVGTAPLAKLDAGVGDKTKINYGNPDLGRSKIFVESSGPFFKRILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHHRSSCMTTDFNLGIVVTVFRTFADVFYLFHMVLKFRMAYVSPISRVFGKGELVTDPKMIAKRYLKSDFFIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKLTCRRELSPVKCLLDYLDCGTLDYVDRRIWELNTTVFSQCSPDEENVFNYGIFADAISKNVISSKFLQKYFYCLWWGLQNLSSYGQGLDTTTFIGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEECRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRVIAKSLSMQESFSLTPKKPAAEEAEQEEEEHNIPRSKYSQAKQNLGVTILASRFAANTRRGAQKLKDVELSKLRKPDEPDFSEEPDD | 732 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4089781 | 4098629 | + | MC11g0528 | Mch11g0634 | 679568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch11g0634 | 732 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 492 | 622 | IPR000595 | - | |
| Mch11g0634 | 732 | Gene3D | Jelly Rolls | 490 | 610 | IPR014710 | - | |
| Mch11g0634 | 732 | Pfam | Cyclic nucleotide-binding domain | 515 | 604 | IPR000595 | - | |
| Mch11g0634 | 732 | MobiDBLite | consensus disorder prediction | 712 | 732 | - | - | |
| Mch11g0634 | 732 | CDD | CAP_ED | 492 | 623 | IPR000595 | - | |
| Mch11g0634 | 732 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 70 | 710 | - | - | |
| Mch11g0634 | 732 | MobiDBLite | consensus disorder prediction | 659 | 684 | - | - | |
| Mch11g0634 | 732 | FunFam | Cyclic nucleotide-gated ion channel 1 | 419 | 483 | - | - | |
| Mch11g0634 | 732 | SUPERFAMILY | cAMP-binding domain-like | 422 | 614 | IPR018490 | - | |
| Mch11g0634 | 732 | Gene3D | - | 98 | 418 | - | - | |
| Mch11g0634 | 732 | MobiDBLite | consensus disorder prediction | 665 | 681 | - | - | |
| Mch11g0634 | 732 | Pfam | Ion transport protein | 94 | 419 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch11g0634 | 732 | Gene3D | Helix hairpin bin | 420 | 483 | - | - | |
| Mch11g0634 | 732 | SMART | cnmp_10 | 492 | 623 | IPR000595 | - | |
| Mch11g0634 | 732 | FunFam | Cyclic nucleotide-gated ion channel 1 | 490 | 608 | - | - | |
| Mch11g0634 | 732 | SUPERFAMILY | Voltage-gated potassium channels | 90 | 414 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0634 | Mch-Chr11:4089781 | Mch6g0569 | Mch-Chr6:3847913 | 0 | dispersed | |
| Mch11g0634 | Mch-Chr11:4089781 | Mch8g1531 | Mch-Chr8:11952081 | 7.40E-300 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch11g0634 | K05391 | - | csv:101211072 | 1216.45 |