Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0649 ATGGTAGAACCAGAGCAAGTGGAGAACATTGAATTTCGATGGGGCAAAAGGAAAGCAATTGGTGGGAAGAAGAAGGATGTGACCTTTTATGAATCTTGTACTTATGACGGCGTAGAATATTTTCTTTACGACTCTGTCTACCTATATAAGGAAGGTGAACCAGAGCCTTATATTGGAAAAATTCTTAAAATGTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATCCTTTGGTTTTTTCGACCTTGTGAGATTCTTAATTATCTTGGAGCTGAAGACACACCGGATAACGAATTATTTTTGGCATCTGGTGAAGGTGTTGGCCTTGCCAATGTTAATCCTTTGGAAGTGATTGCTGGAAAGTGCAACGTTCTCTGCATTTCCAATGACAGCAGAAATCCACGACCTTCAGATGAAGTTCTCAAAAAGGCTGATTTTGTCTTTTCTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAATGACATGTGTGGAAAAATTGCTGGAATAGAAGTTAAATTTTTACTTAATAGAGTAGATAGTTCAAAGGATGTTAACAGGACTGATAAGGATGGGAAAGATGCAAGTGGCGGTACAATTGTAAATACTGAATTTGATGATCCCTCTCAACAGAACACTCCAAATGGAGAATTAACTTTAGAGAAGCATGAAAGCTCTGTCGAGAAGTCCACAGAGGAAAATGTTGATTTGAAGGTTTCTCTGCCTACACAGAAATCCTCCAATGAAGAGAAGTCTACTGCTTGTGCAAGTGATGGAGGACATGGAATGGCTAACACTAGTAGCAAAGAAGAAAACATCTTAGGTGATAAGGTCTCTCCAAGGCTTAAAATCGATCCTAACGAGATAGCTGGTAAAGATGTCAAAGCGCTAGCTAAGGATGTTGAGTTTGAAGATAGAGTTAGAAGTCCCAAGGGCTCTGCCGAAGTTGAACATAGGCCAGCTAAGAGGGCAAAGCTAGATACTTCTATTCAGTCATCTCCTGGCAAGGCCAAGAACAACGTTCAAAAGTTCGGTCTTAATCGCAATAATAGTGATACACAGGCTTCCGCACCTAAGAGTATTGTTTCTGAAGATGCTTCCAAAACCAAAAATGTAAAAGATTATCATGGAACAAAAGACGGCCTTATAAAGAAGCCTAAGCTTGATGAGAAGCCACCAAAGGTTTTTAATGGCACGAATATAAAATCCCCTTCCCAAATATCTTCAGACAAGAGTGCCAAAATAGATGGTCAAACTGTGGAGGTTACCAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTTCCTTGGGAAGAAAGAATGAAAACTGCACATGAGCAAGGAACACTTGTTCTGATTCAAAACTTGGATCCAGCTTACACTTCAGGTGAAGTGGAGGATATCGTGTGGCATGCCTTCAGTGAGAGTTGCACAGCAAAGATGGTTCAGCGTACTGCATATTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACCAAGGAAGCAGCAGAGAAAGTGGTTAGAAAACTAGATGAAGGTTGCTTAGTACTCTCAAATGGGAGGGCTCTTGTTGGTAGCTTTGCAACTCCCCATTTCCCGGCAAAGAAACAAACTTTTTTTGGGCATCACAGTATCGATAAGCTTAGACATCAGATGCAACGTGAGATGAAAGATGCTGTGTCAACCTCGCATTGTTCTCAGCCGAACACGGTAGAATATGACATGGCCATGGAATGGTGTTTACTAGAAGAAAGATCAGAGCTTGCCTGCAAAAAATTGTTTAAGCAACAAGAAGAGGAGTTAAGAAAACTCAAGAGCAAGCTGATATCTAGATGA 1848 40.64 MVEPEQVENIEFRWGKRKAIGGKKKDVTFYESCTYDGVEYFLYDSVYLYKEGEPEPYIGKILKMWQNPDKTKKVKILWFFRPCEILNYLGAEDTPDNELFLASGEGVGLANVNPLEVIAGKCNVLCISNDSRNPRPSDEVLKKADFVFSRTFDVGKQEVCNDMCGKIAGIEVKFLLNRVDSSKDVNRTDKDGKDASGGTIVNTEFDDPSQQNTPNGELTLEKHESSVEKSTEENVDLKVSLPTQKSSNEEKSTACASDGGHGMANTSSKEENILGDKVSPRLKIDPNEIAGKDVKALAKDVEFEDRVRSPKGSAEVEHRPAKRAKLDTSIQSSPGKAKNNVQKFGLNRNNSDTQASAPKSIVSEDASKTKNVKDYHGTKDGLIKKPKLDEKPPKVFNGTNIKSPSQISSDKSAKIDGQTVEVTRRPDADRSRWFKGLPWEERMKTAHEQGTLVLIQNLDPAYTSGEVEDIVWHAFSESCTAKMVQRTAYSMPHIGQAYVVFKTKEAAEKVVRKLDEGCLVLSNGRALVGSFATPHFPAKKQTFFGHHSIDKLRHQMQREMKDAVSTSHCSQPNTVEYDMAMEWCLLEERSELACKKLFKQQEEELRKLKSKLISR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4226907 4234741 - MC11g0541 Mch11g0649 679583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0649 615 Gene3D - 438 537 IPR012677 -
Mch11g0649 615 Pfam BAH domain 44 153 IPR001025 GO:0003682(InterPro)
Mch11g0649 615 MobiDBLite consensus disorder prediction 305 427 - -
Mch11g0649 615 MobiDBLite consensus disorder prediction 326 365 - -
Mch11g0649 615 MobiDBLite consensus disorder prediction 236 272 - -
Mch11g0649 615 Gene3D - 5 166 IPR043151 -
Mch11g0649 615 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682(InterPro)
Mch11g0649 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 534 IPR000504 GO:0003723(InterPro)
Mch11g0649 615 MobiDBLite consensus disorder prediction 183 272 - -
Mch11g0649 615 SMART BAH_4 38 161 IPR001025 GO:0003682(InterPro)
Mch11g0649 615 MobiDBLite consensus disorder prediction 221 235 - -
Mch11g0649 615 SUPERFAMILY RNA-binding domain, RBD 442 534 IPR035979 GO:0003676(InterPro)
Mch11g0649 615 PANTHER PROTEIN ANTI-SILENCING 1 1 612 - GO:0003723(PANTHER)|GO:1905642(PANTHER)
Mch11g0649 615 MobiDBLite consensus disorder prediction 398 416 - -
Mch11g0649 615 MobiDBLite consensus disorder prediction 305 325 - -
Mch11g0649 615 CDD RRM_SF 453 527 - -
Mch11g0649 615 MobiDBLite consensus disorder prediction 202 220 - -
Mch11g0649 615 MobiDBLite consensus disorder prediction 366 392 - -
Mch11g0649 615 FunFam Bromo-adjacent homology (BAH) domain-containing protein 8 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0649 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0649 Mch-Chr11:4226907 Mch8g1151 Mch-Chr8:8197829 2.08E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43