Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0654 ATGGTGCGCTCTAAAACAAAATTAATGAACATTCTGATAGAAAGAGGGAAACCTCAGGAAGCCCAGAATGTTTTTGACAATTTGATCGCGGATGGGCATAGACCCTCCCTAGTAACATATACGACCCTTCTGTCTGCATTGACTGTCCAGAAGCGCTTCAAGTTCATACAGTCAGTTATATTGATGGTGGAAGAAAATGGAATGGAACCAGACTCGATATTTTTTAATGCTGTTATCAATGCTTTCTCTGAAGCTGGTAATGTAGAAGAAGCCATGATAGCTTTTCAAAAAATGAAGGCTAGTGGTCTAAGGCCCAGTACAAGCACTTTTAACACTCTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATTGAACTGCTGGACTTGATGTACAGAGAGGAAACTTTAAAACCCAATCTGAGAACTTGTAATGTACTTGTCAGAGCATGGTGTAAGAAGAAGAAAATCCCAGAGGCGTGGAATGTGGTGGAAAATATGATAGCCCTGGGAATCAAACCAGATGCTGTTACTTACAACACCATCGCAACTGCTCATGCCCAGAGTGGAGAAACAGATCAGGCTGAAAAGATGATTCTACAGATGCAAGATAACGGCATTCGACCTAATCAGCGGACTTGCAGCATCATAGCTTGTGGATATTGCAAAGAAGGTAGACTAAAGGAGGCCATGAGGTTTATATACAGGATGAAGGATCTTGGCGTTCGTCCTAATCTGGTTCTTTTTAACTCACTGATCAAGGGATTTGTAGAGTCGATGGACAGAGATGGGGTTGACAAGGTTCTGACGTTGATGGAAGAATTTGGTGTTAAACCAGACGTGATTACTTTTAGCACCATCATGAATGCATGGAGCACGGCTGGATTCATGGTGAAGTGCAGAGAAGTTTTTGATGAGATGGTGAAGGCCGGTATCGAACCAGACACACATGCATACAGCATTCTAGCCAAAGGGTACGTGCGTTCACAGGAACCAGAAAAGGCTGAAGAACTATTAAATACTATGACCAGATATGGAAAACGTCCAAACGTAGTTATTTTTACAACCATCATTAGCGGATGGTGCAGTTCCGGCAGAATGGATAATGCGATAAAGATCTTAAACAAGATGTGTGAATATAGAGTTTCTCCTAATTTGAAGACATTTGAGACTATAATATGGGGTTATAGTGAGACAAAGCAGCCATGGAAAGCAGAAGAAATGCTCCAAATAATGCAGGAATTTGAAGTTCAGCCTGAGAAATCTACCATCTTATTAGTTGCAGAGGCCTGGCGCACCATTGGATTGACAAAAGAAGCAAACAGGATTAAGAGTATCATGAAATGCATGGACACCACTGATCAGATGGAGGTGAAGGACGATGAGATGCGAACAGAGAACTCGAACAGGTTCTATCAGAAGCAACAGCTTTCTGGTTCCTCTCATACAAATATATTGCAGATACCAAGTGCTACCGCAGTCAATCAAAAGGGATCAACTGCTGGAACTAAAAGAAATCGTGTCTCGAAGCGAGACGTGGATTTTTGTTTGGAGAGTTCATGGCTTGCTACAAAATCTGTTTATCAGTCTCGCACTTGCAAGTTTGGGGGAAGGTTGCCTATCATCTCTCGCAAGCAGTCGCAGTCGCAAGCGCAACTCGGTATGTACAGTCATTTCTCACATTCATGTACAGTCGCGACATTGATGTAA 1716 42.31 MVRSKTKLMNILIERGKPQEAQNVFDNLIADGHRPSLVTYTTLLSALTVQKRFKFIQSVILMVEENGMEPDSIFFNAVINAFSEAGNVEEAMIAFQKMKASGLRPSTSTFNTLIKGYGIAGKPEETIELLDLMYREETLKPNLRTCNVLVRAWCKKKKIPEAWNVVENMIALGIKPDAVTYNTIATAHAQSGETDQAEKMILQMQDNGIRPNQRTCSIIACGYCKEGRLKEAMRFIYRMKDLGVRPNLVLFNSLIKGFVESMDRDGVDKVLTLMEEFGVKPDVITFSTIMNAWSTAGFMVKCREVFDEMVKAGIEPDTHAYSILAKGYVRSQEPEKAEELLNTMTRYGKRPNVVIFTTIISGWCSSGRMDNAIKILNKMCEYRVSPNLKTFETIIWGYSETKQPWKAEEMLQIMQEFEVQPEKSTILLVAEAWRTIGLTKEANRIKSIMKCMDTTDQMEVKDDEMRTENSNRFYQKQQLSGSSHTNILQIPSATAVNQKGSTAGTKRNRVSKRDVDFCLESSWLATKSVYQSRTCKFGGRLPIISRKQSQSQAQLGMYSHFSHSCTVATLM 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4260599 4264191 + MC11g0545 Mch11g0654 679588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0654 571 Gene3D Tetratricopeptide repeat domain 300 502 IPR011990 GO:0005515(InterPro)
Mch11g0654 571 Gene3D Tetratricopeptide repeat domain 205 299 IPR011990 GO:0005515(InterPro)
Mch11g0654 571 PANTHER OS01G0228400 PROTEIN 2 569 - -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Mch11g0654 571 Gene3D Tetratricopeptide repeat domain 4 134 IPR011990 GO:0005515(InterPro)
Mch11g0654 571 Gene3D Tetratricopeptide repeat domain 135 204 IPR011990 GO:0005515(InterPro)
Mch11g0654 571 Pfam PPR repeat family 70 117 IPR002885 -
Mch11g0654 571 Pfam PPR repeat family 141 189 IPR002885 -
Mch11g0654 571 Pfam PPR repeat family 281 329 IPR002885 -
Mch11g0654 571 Pfam PPR repeat family 351 397 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Mch11g0654 571 SUPERFAMILY TPR-like 145 238 IPR011990 GO:0005515(InterPro)
Mch11g0654 571 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 145 178 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 75 106 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 215 247 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 320 353 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 109 142 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 249 283 IPR002885 -
Mch11g0654 571 NCBIfam pentatricopeptide repeat 354 387 IPR002885 -
Mch11g0654 571 Pfam Pentatricopeptide repeat domain 204 259 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Mch11g0654 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0654 K17710 - - mdm:103441183 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0654 Mch-Chr11:4260599 Mch6g0810 Mch-Chr6:5636044 1.96E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23