Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0667 ATGGCAAAATTCAATTGCTTCTCTGTTCGGGCTGGGAAGAAGAAGAAAACCAAGGGGGATTTGGAATCAAAAACACCTGCTGAAACCAATAATAATTTGTCACAGACTTTGCAAGTCAGCATCCATCACCCTGAGGAGCCCTTTCAAGTTGAAGAAGCGAAGTCGTCAACTCTGGACGTTTCGATTCATTACCCATCTGAGAATGATTCTAGGCTGGATGTCAAGATAACCAACCATGAGATTCCTATAAGACGAGGAGCTGTAGAAGCAGCATATGAAGGTGAAGATGAGCGCGACGACAACTCCATCAAGCGGAACCTTTCTGATTATGATCTCCCTGCCCAAGCCACCTGCGGAGAAGAATTTGAGTTTAGGTTGTCTAATGCGTCGGGGAAACAATTTGATAAGATCACCATTGAAGGTGGTGGAGGCGCTGATATGACGATCCAAAGTGGACATGTTAGTGATCCTGGAATTGGTAGGGCCGTATCCTGGGCATCACCTAAACTTAAACGCTCCTGCTCGAATTTGGAAACCAGGGATGTGCTTAGAAATTTAACTCATCAGTTGCCTCCAACAAAGTCCCAGTCCTATGAAGAATTGCAAGGACTGGCAGACAAAATGAGGAACTATGTGGATCCTGGCAGTCCGGGTTCGGTTATGACGCATCACAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCGAGCCAGATCCTTCCTTCCAGAAGTAGAAGGTTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTACAAAATCCGTGGAGTACCAAGGCCCCTCCCACCAGCTTTGCTTTCAACCAGCAAGGTGGGTATTGTTCGGATAGTCTCGAGCCGAACAGAGCAGCGGGAAAAGGTATGATGGAATCACCTGGATCATTTGCTGAGGAAACCTGGGCAGGCCCGAGTAACATCAAAAGTGAAGATCAGAATCAGGAGAGTTTGTGTAATGGAGTCTCTGGTCTATGGCCACAGAACCAGTGGGTTGCATTCTCAGCAGAATCATCTTCACTAAGAAGAGTGGATGAGTGGGTGAAAGATCTTCAAATCCAACCCCGTCTTGAGGTTGGGGATGATGGTGATGATGATGCAGATACTTTCTTCCCACCATCTCCCGAGAGAAGTTCAACTCACATAACTCGACGCGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCGTCATACAGTCCCTGAATTCTTCCTCAACCGTAGCTCACATCTCTGGTATAGGCTTAAAAGCCATACCCACAATCTCACACCTATCCGGTCTTAGATCTGTAAACTTGTCCGGAAATCTCATAGTTCACATAAATCCTGGATCACTCCCCAAGGGATTGCACACTCTTAACTTGTCCAGGAACAAGATAAGTGCCATTGAAGGACTCAAGGAATTAACACGACTTCGGATTCTTGATCTGAGTTACAATCGCATATCTCGCATAGGACATGGATTGTCAAACTGTGCAATTATCAAGGAACTCTATCTTGCTGGCAACAAGATTAGCGATGTTGAGGGACTGCACCGACTCTTGAAGCTCACAGTTCTCGACCTAAGCTTCAACAAGATCTCAACAACCAAAGCTCTGGGCCAACTTGTTGCCAACTATAACTCGCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGCAACGTGAGCGATGAGCAGCTACGCAAGGCAGTCGTTGGCCTTCTTCCAAACCTTGTCTACCTTAACAAGCAGGCCATCAAAGCACAGAGAGCACGAGAAGTAGCAACCGATAGCATCGCTAAAGCTGCACTAGGGAATAGCAGTTGGAGCTCACGTCGAAGAACATCAAGAAAAACGAGCCATGTTGCATCATCTCCCATTAGTGGGCACAGAAGCACTGCAAGTGTTGCACACAAAGGAGGCAGGCACAGATCAAAAGCCGCCCCAACCTTACGCCATTCTTCGTTGGGGATGCCGTCATCTGCTCTTGCCTCTTCATCTCGTTAG 2013 46.75 MAKFNCFSVRAGKKKKTKGDLESKTPAETNNNLSQTLQVSIHHPEEPFQVEEAKSSTLDVSIHYPSENDSRLDVKITNHEIPIRRGAVEAAYEGEDERDDNSIKRNLSDYDLPAQATCGEEFEFRLSNASGKQFDKITIEGGGGADMTIQSGHVSDPGIGRAVSWASPKLKRSCSNLETRDVLRNLTHQLPPTKSQSYEELQGLADKMRNYVDPGSPGSVMTHHSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQNPWSTKAPPTSFAFNQQGGYCSDSLEPNRAAGKGMMESPGSFAEETWAGPSNIKSEDQNQESLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIQPRLEVGDDGDDDADTFFPPSPERSSTHITRRGEPNLTEEILYANSVIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIVHINPGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCAIIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQSNVSDEQLRKAVVGLLPNLVYLNKQAIKAQRAREVATDSIAKAALGNSSWSSRRRTSRKTSHVASSPISGHRSTASVAHKGGRHRSKAAPTLRHSSLGMPSSALASSSR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4357698 4365726 + MC11g0558 Mch11g0667 679601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0667 670 ProSiteProfiles Leucine-rich repeat profile. 501 522 IPR001611 GO:0005515(InterPro)
Mch11g0667 670 MobiDBLite consensus disorder prediction 363 388 - -
Mch11g0667 670 Gene3D Ribonuclease Inhibitor 496 594 IPR032675 -
Mch11g0667 670 FunFam Outer arm dynein light chain 1 protein 495 593 - -
Mch11g0667 670 MobiDBLite consensus disorder prediction 608 670 - -
Mch11g0667 670 SMART LRR_typ_2 476 499 IPR003591 -
Mch11g0667 670 SMART LRR_typ_2 521 543 IPR003591 -
Mch11g0667 670 SMART LRR_typ_2 432 455 IPR003591 -
Mch11g0667 670 Pfam Leucine rich repeat 434 489 IPR001611 GO:0005515(InterPro)
Mch11g0667 670 Gene3D Ribonuclease Inhibitor 393 495 IPR032675 -
Mch11g0667 670 ProSiteProfiles Leucine-rich repeat profile. 478 500 IPR001611 GO:0005515(InterPro)
Mch11g0667 670 PANTHER NISCHARIN RELATED 148 639 - GO:0005737(PANTHER)
Mch11g0667 670 SMART LRR_sd22_2 454 475 - -
Mch11g0667 670 SMART LRR_sd22_2 476 498 - -
Mch11g0667 670 SMART LRR_sd22_2 499 520 - -
Mch11g0667 670 SMART LRR_sd22_2 521 542 - -
Mch11g0667 670 Pfam Leucine Rich repeats (2 copies) 503 538 IPR025875 -
Mch11g0667 670 MobiDBLite consensus disorder prediction 11 31 - -
Mch11g0667 670 FunFam Outer arm dynein light chain 1 protein 381 494 - -
Mch11g0667 670 MobiDBLite consensus disorder prediction 656 670 - -
Mch11g0667 670 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515(InterPro)
Mch11g0667 670 ProSiteProfiles Leucine-rich repeat profile. 456 477 IPR001611 GO:0005515(InterPro)
Mch11g0667 670 SUPERFAMILY Outer arm dynein light chain 1 423 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0667 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0667 Mch-Chr11:4357698 Mch4g0202 Mch-Chr4:1336755 1.88E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34