Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0679 ATGGCAGTTTCCTTCCTCTCTACCGTGCCTTCATTTCTTCCTCTTCAAACCGCCCCAGCTGCACCATCTCCCTCTTCTCACACTGTCAGAATTCGTTGTGGCCAAATCAAACCGGATTCTAACAGCGAGGATCGATTTAGTAGAAGAGATCTTCTTCAAGGCTTCGGCGGTACCCTTTCCATGGGATTGATGGTAAGCTCACACCAAATGGTGGAACCGGCTTATGCTGCTGATTTAATACAGCGCAGGCAACGATCTGATTTTTTATCAAATATCAAGGGGACCCTTTTTACAGCTATTAAGAAAGATCCAGACATCGTTCCCTCCCTTTTAACATTAGCACTAAATGATGCTGTGACTTATGATAAGGCAACTAAATCTGGAGGGCCAAATGGATCCATTCGCTTCAGTTCAGAGATTTCCAGACCTGAAAATGAGAAACTTTCAGCTGCTTTGAGTTTAATAGAGGAAGCAAAGAAAGAGATAGATTCGTATTCAAAGGGTGGACCCATTTCCTATGCAGATCTTATCCAATTCGCAGCACAAAGCGCCACTAAATCCACTTTTCTAGCTTCTGCCATCAGAAAATGTGGTGGGAATGAAGAAAAGGGGAATTTGTTATATACTGCGTATGGTTCCAGCGGGCAGTGGGGCTTGTTTGACAGGCAATTTGGAAGATCAGATGCCGAAGCACCTGATCCTGAGGGAAGGGTTCCCATCTGGGGGAAAGCTAGCGTCCAGGAAATGAAAGAGAAGTTCTCTGCTATTGGGTTTGGTCCCCGACAGCTAGCTGTTTTGTCTGCATTTCTGGGTCCTGATCAGGCAGCAACGGAGGAATTTCTAGCCTCAGATCCTGATGTTTTCCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACTACTCTTACAAAAATAAGTAGCTTGGGACAGCAAATAAATTACGAGGCTTACACCTACCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG 1032 44.09 MAVSFLSTVPSFLPLQTAPAAPSPSSHTVRIRCGQIKPDSNSEDRFSRRDLLQGFGGTLSMGLMVSSHQMVEPAYAADLIQRRQRSDFLSNIKGTLFTAIKKDPDIVPSLLTLALNDAVTYDKATKSGGPNGSIRFSSEISRPENEKLSAALSLIEEAKKEIDSYSKGGPISYADLIQFAAQSATKSTFLASAIRKCGGNEEKGNLLYTAYGSSGQWGLFDRQFGRSDAEAPDPEGRVPIWGKASVQEMKEKFSAIGFGPRQLAVLSAFLGPDQAATEEFLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSLGQQINYEAYTYPVKKVDLSKLKL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4428698 4437436 - MC11g0570 Mch11g0679 679613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0679 343 Gene3D - 76 255 - -
Mch11g0679 343 Gene3D - 256 343 - -
Mch11g0679 343 CDD plant_peroxidase_like 92 340 - -
Mch11g0679 343 SUPERFAMILY Heme-dependent peroxidases 74 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 Pfam Peroxidase 94 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 PRINTS Plant ascorbate peroxidase signature 139 163 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 PRINTS Plant ascorbate peroxidase signature 267 292 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 PRINTS Plant ascorbate peroxidase signature 125 135 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 PRINTS Plant ascorbate peroxidase signature 107 122 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 ProSiteProfiles Plant heme peroxidase family profile. 69 271 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch11g0679 343 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 275 337 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009535(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Mch11g0679 343 FunFam thylakoid lumenal 29 kDa protein, chloroplastic 75 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0679 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0679 Mch-Chr11:4428698 Mch1g1599 Mch-Chr1:17139790 2.80E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g445 . . . Bda03g00483 . Bpe04g00436 . . . . Cma01g01622 Cma09g00570 Car01g01236 . . Cpe06g00433 . . . . . . . . . . . . . . . Cone4ag1323 . . . . Csa03g04459 Chy04g00242 . . . . . . . . . Sed13g2145 Cmo01g01665 Cmo09g00557 . . . Car09g00497 . Cpe02g00362 Bhi09g02455 Tan01g3804 Cmetu04g1099 . Hepe01g2140 Mch11g0679 . Cla11g01395 Cam11g1451 Cec11g1479 Cco11g1476 Clacu11g1610 Cmu11g1429 Cre11g1849 . . . Cme04g00270
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009724 1 2 0 0 1 0 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 32