Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0699 ATGGAGGAGTTCGCCTTTCACGATGGTAACGTCTGCGGTTTGCTCGACAGCAGGCACATCAACTTTCGTCAAGACTCCACATGTAATTTGCAGATGCACTCGTCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGGGACACCAGGGGTGTGTTAATGCAGTGGCCTGGAATTCTAGTGGTTCACTTTTGATATCTGGATCAGATGATACACGGATCAACATCTGGAGCTATTCTGGTCGAAAGCTATTGCACTCTGTGGATACTGGGCACTCTGCAAACATATTCTGTACAAAATTTGTTCCTGAAACTTCTGATGAGCTTGTGGTTTCAGGAGCTGGGGATTCAGAGGTGCGATTGTTTAATTTATCTCGCTTAAGTGGTCACGATGATAATGCCATAGCTTCATCGGCTTTGTATCAGTGTCACACCAGAAGAGTAAAAAAATTAGCTGTCGAAATAGGAAACCCAAATGTAGTATGGAGTGCTAGTGAGGATGGAACTCTTAGACAACACGACTTTCGGGAGGGCATGTCTTGCCCTCCTGATGGATCTCCTCACCAAGAATGTCACAATGTTCTTCTTGATTTGCGGTGTGGAGCAAAGAGGTCACTGGCTGATCCTCCAAGACAAACTCTTGCTCTAAAATCTTGTGACATTAGTTCCACCAGACCACATTTACTACTGGTTGGTGGAAGTGACGCATTTGCACGGTTATACGATAGAAGGATGCTGCCACCCTTGTCTTCCAGCCAGAAAAGGATGTCGCCACCTCCTTGTGTTAACTACTTCTGTCCAATGCATCTCTCTGATCGGGTTCGCTCGAGTTTACATCTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATCCTGCTTAGCTACAGTGGAGAACATGTATATTTGATGAATGTAAATCATGCTGGTCAAAATACGATGCAGTATACATCAGGAGATGTTTCTAAGTTAATGAGCTTCACTCCTATACTCAACGGGTTGGAGTTGCAGTATCCTATATCCAATTTCTCAAATGGTCTGCCTATAAATTGTGGCGTTAATTCTTCAAAGCTTGATAAGTGCAGAAAATTATTACAAATTGCTGAAAAATTCTTGGAGGGTGGGAACTACTTTGGTGGAATTGAGGCGTGCAATGAAATTTTGGATGGACATGGTCGTAATATTGGGGTTATTTTTAAGCACGATTCATTATGCACCCGTGCTGCTTTATTACTCAAGCGGAAATGGAAGAACGATGTTCATATGGCAATAAGAGATTGCTACAGTGCTAGGAAAATTGATCATTCCTCTGTCAGAGCACACTACTACATGTCTGAAGCTTTATCACAGCTGGGTAGACATAAGGAAGCCCTAGATTTTGCCTTTGCTGCTCAGTGTTTAGCCCCATCTAATCCTGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGAGACCTCGCTGCAGCTGAATTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAGATCAGCACCTTTAGGTGGAGTATTATCATTAAGTGACTTTCTTTACCGCTCAGATGCAAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGACTCTGACTATGATGAGGAGGTCGAGCTGGACTTCGAAACCTTATCAGGTGATGAAGCCCATGATGTTGATTCCAACATTCTACATGGGAGTTTAAATCTTAGAATACATAGACGAGTTGATCCAGCGAGAGAAAGAGTTGGCGCAAATGGCTCCTGTGGGTCTCCTTCATCATCGCAAAATGATGGAATACTTTATCAGCCGGAGCCTGTCATTGATATGAAGCAAAGATATGTTGGTCATTGTAATATTGGAACTGATATTAAACAGGCTAGTTTTCTCGGGCAAAGAGGTGAATATGTGGCCAGTGGAAGTGATGATGGTAGATGGTTTATTTGGGAAAAGGGAACTGGTAGACTGATCAAAATACTTTTTGGAGATGGAGCTGTTGTGAATTGCGTGCAATGTCATCCATACGATTGTGCTATCGCTACTAGCGGGATCGACAATACCATAAAGCTATGGACTCCCACTGCTCCAGTCCCATCAATTGTAGCCGGTGGAGCAGTCGGACCGCAGGCCTCCGATGTGTTGACTGCAATGGAAAACAATCAGCGCAGACTCTGCCGTAATAGAGAAGCCATACTGCCGTTTGAAATTTTGGAACGGTTTAGGATGCACGATTTCTCAGAAGGAAGCCTTCATCCATTTGAATGTGCTCAGAGTTGA 2274 43.49 MEEFAFHDGNVCGLLDSRHINFRQDSTCNLQMHSSFIQRLSQEKELEGHQGCVNAVAWNSSGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPETSDELVVSGAGDSEVRLFNLSRLSGHDDNAIASSALYQCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGSPHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSDRVRSSLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHAGQNTMQYTSGDVSKLMSFTPILNGLELQYPISNFSNGLPINCGVNSSKLDKCRKLLQIAEKFLEGGNYFGGIEACNEILDGHGRNIGVIFKHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDHSSVRAHYYMSEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVESVKRDLAAAELEKSNKGNDGALRSAPLGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDSNILHGSLNLRIHRRVDPARERVGANGSCGSPSSSQNDGILYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKGTGRLIKILFGDGAVVNCVQCHPYDCAIATSGIDNTIKLWTPTAPVPSIVAGGAVGPQASDVLTAMENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4592383 4610342 - MC11g0588 Mch11g0699 679633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0699 757 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Mch11g0699 757 Gene3D Tetratricopeptide repeat domain 353 501 IPR011990 GO:0005515(InterPro)
Mch11g0699 757 MobiDBLite consensus disorder prediction 522 541 - -
Mch11g0699 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 690 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 271 305 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 134 174 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 81 123 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 606 649 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 39 78 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 652 691 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SMART WD40_4 202 242 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 FunFam Transducin family protein / WD-40 repeat family protein 560 734 - -
Mch11g0699 757 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 Pfam WD domain, G-beta repeat 654 690 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 Gene3D - 576 695 IPR015943 GO:0005515(InterPro)
Mch11g0699 757 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 9 746 IPR045151 GO:0005737(PANTHER)|GO:0045717(PANTHER)|GO:0080008(PANTHER)
Mch11g0699 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515(InterPro)
Mch11g0699 757 SUPERFAMILY WD40 repeat-like 38 690 IPR036322 GO:0005515(InterPro)
Mch11g0699 757 SUPERFAMILY TPR-like 359 476 IPR011990 GO:0005515(InterPro)
Mch11g0699 757 Gene3D - 30 332 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0699 K11807 - - csv:101206836 1406.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0699 Mch-Chr11:4592383 Mch4g0462 Mch-Chr4:2960121 3.30E-21 dispersed
Mch11g0699 Mch-Chr11:4592383 Mch2g0971 Mch-Chr2:6567039 2.00E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39