Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch11g0708 | ATGGAGAACTTGGACGGGAAATCAGCAGATTCTTCGCAATGCGTTCGTGTTGCTGTTAATATAAGACCTTTGATTACATCCGAGCTAATGGTTGGATGTACAGATTGTATTACAGTTATTCATGGAGAGCCTCAGGTTCAAATTGGTTCACACGTATTCACCTATGATAATGTGTATGGTAGTGCTGGATCGCCATCTTATGCATTATACGACGACTGTGTTGCTCCACTAGTTGATGCGCTCTTTCAGGGTTATAATGCCACTGTCCTTGCTTATGGACAGACGGGGTCTGGAAAGACATACACAATGGGGACAAATTATTCTGGTGGAGGAAGTAAGGATGGAGTAATACCCAAAGTAATGGAAAAGATATTCAAAAAGGTTGAGGCATTGGAAGATTCTACAGAATTCTTGATTAGAGTATCATTTATCGAGATATTTAAGGAAGAAGTGTTTGATTTGCTTGATGCAAATACTTGCCTTAACACAAAGGTTGAAGGGACAAAACCTTTTGTCCCTTCACGAGTTCCAATACAAATAAGAGAAACTGTAAATGGTGGGATTACGCTTGTGGGTGTCACTGAGGCAGAGGTTCGGACGACTGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCGCGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACCATTACCATGGAGCAAAAGAAAAAGCCTGGACGCCTTGCAGGCGTGTCTCAAGATGATTCATGCGATGACATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCAGGTTCTGAAAGAGCAAAACGAACGGGTGCTGATGGCATGCGCTTTAAAGAAGGGGTTCATATCAACAAGGGCCTATTGGCTCTCGGCAATGTTATAAGTGCATTGGGAGATGATAAGAAACGAAGAGAAGGATGTCACGTTCCCTACCGTGATAGCAAGTTAACACGCTTGCTACAGGCATGTTTTTCTTTTCTTTTAACTTGTGTTAGTCCTGCTGACTCAAATGCTGAGGAGACCCTAAACACACTAAAATATGCTAATCGTGCTCGTAATATTCAAAATAAAGCAGTCATCAACCGGGATCCGGTAGGAGCTCAGATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTCTATTCTACCGCGGTGATGCAGGTTTACCATTTGAGGAACTTCAGATTCTAAAGCACAAAATATCATTACTTGAAGCAAACAATGGAGAGCTACTGCGGGAGCTTCAAGAACGTCGAGTCACTTGCGAGCATCTGTCTCAACGTGCTATTGATGCTCAGGTTGAAAAAGGCAAACTGGCCATGATAATCGAATCAGTGCGGAATGGTAAATCTTTAGATGAGATTGAATCCAACTTCGACAAGGATTGTGAATTAGTCAAGAGTTATGTTTCAAAAATTCAAGAACTAGAAGGGGAGCTACTGCGTTTGCAAAGCTTTAACCACCCCAAGCACAGTCGATATGCTGACCTTGTTGAGTTCGATGATGATAGGCCACACGCTAGTAATATTTTATTTCCATGTGCAAATGAGTATTCATCTGACTATGATTCCAAAGCTGTGGATATTTCAGATGGAACTGAAGATCATGAAAAGGAGCTTGAACATTCAACAATTCAAGAAAGATTCGATAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTTCTGGTGCGAATACATCTGTTCTTAAACACCATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATTGAGGAACTCAGATGTAATCTTTCAAACATATCTTCTACATCTGATGATGGTGCGCAAAAGTTGAAGCAAGAATATCTTCAGAAATTGAATTTCTTGGAAACCCAGGTCTCGGAACTGAAGAAGAAACAAGATGCTCAGGCTCAACTGTTGCGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAAGACGAGATCCAGAGAATTAAGACCCAGAAGGTTCAACTGCAACACAAGATTAAGCAGGAGTCTGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTACAGCTGAAGAAGGAGGGTAGGAGAAATGAGTACGAAATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAAAGAAAGACAGAAGAAGCTGCTCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCAGTGTCGGAACGAACGGTCCTGGAATTCAGGCTATAATGCAGAATATTGAGCATGAACTTGAAGTCACAGTAAGGGTGCATGAAGTTCGTTCTGAATATGAACGTCAAATGGAAGAGAGGTCTAAAATGGCCAAGGAGTTGGCAAAGCTTAAGGAGGAAGCAGATTTGCACAGGGGAGCTAATTTAAGTGATTGTACCCAAAAAATGTCACCCGGTGCAAGAAATTCAAGGATTGTTGCTCTTGAAAACATGCTTGCTACTTCATCCAGCTCTCTGGTTTCTATGGCCTCGCATTTGTCGGAGGCAGAAGAGCGTGAACGCGTTCTTGGTGGTAGGGGACGTTGGCATCAAGTTCGTTCTCTTGCAGATGCAAAGAATATGATGAATTTTTTGATGAATTTAGCATCTTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCTAGGGAGAAGGATTCGGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGCAGTATGCTAAAGAAATCAGAAGAGCAAAAGGCCGAACTTATTCATCAGAACTCAGCTCTGAAAAAGCATACCATGAGAAGCTCTTCAGATCAGGCCAACAGTGGGGGCCATAACTATGATTTACGAAAGCAGGAGCATCGAAATTCCGTCCTTTTACTAGCAGACATGGATACCTCAGATTCCGATTATTCAGATGTCGATGACGCGAATTATGACTGGGAGAAATCTATGAAACGACGACATGGCAGAAAAAGAGTCTCCAAAGCCAAGGGCCGTTCAAGTATGATGGTTGTCTCAGATGGCACTAACAGTACAAACTGTAACTTGGATAGTTCTGGTGAAGGAGTAGTTCTTGTGAATGAGACCATAACTGCTACTACCACCAGTGTATGCTGCAGTTGCAGCAGATCCTCTTATTGCAAGACAACAAAGTGCCAATGTAGAGCCAGCGGTGGTGCGTGTGGCTTGTCATGTGGTTGCAGACCATCAAAGTGTGCAAACAGAGGTAGTAAAAGCGAGCGGGATGAGTCGATACGACCGGATTCAGTCGGGGATGTTCGAAGTGGTTCGGAAAACGATGCAACCGACGAGGAGAGTCGTGACCTTGTTTCTCATGGTGCAAGGTTGCTGCAGAATGCTTTAGCTGAGAGAAGACCGAGTGAGGCTCCTCCTGCTGAAGATGGTGGTACAAAAAGAAAGCCTCTATCAGACATAGGAAACACAGTGGCGAAAACAAATGTAAAGAAGCCAAACCAGAGAAAGAAATGGCGAAAATCTACAATCCAACTAGTTCCTACACCACCAGTTTCTGAGACCACCGCCACCACCCAGAAGACAGAGACCGAACCAAGTGAGGTTGTCAACATCCCGTTGAAACTTCCCCGAGCCATGCGATCCGCTGCCGCTAACGGCGGCAACTTACTGAGGGAGAGGAACTCCGATCAGCCGGAAGATTCAGTCGGCGGCAACAAAGAGCAGCATGAACTTACTGTTCCAAAGAGAGTGGACGAGAAAGAGAATTGCAACCGGTAA | 3828 | 43.13 | MENLDGKSADSSQCVRVAVNIRPLITSELMVGCTDCITVIHGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGGGSKDGVIPKVMEKIFKKVEALEDSTEFLIRVSFIEIFKEEVFDLLDANTCLNTKVEGTKPFVPSRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKPGRLAGVSQDDSCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDDKKRREGCHVPYRDSKLTRLLQACFSFLLTCVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPFEELQILKHKISLLEANNGELLRELQERRVTCEHLSQRAIDAQVEKGKLAMIIESVRNGKSLDEIESNFDKDCELVKSYVSKIQELEGELLRLQSFNHPKHSRYADLVEFDDDRPHASNILFPCANEYSSDYDSKAVDISDGTEDHEKELEHSTIQERFDRELKELDKKLEQKEAEMKRFSGANTSVLKHHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIQRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARETSSVGTNGPGIQAIMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEADLHRGANLSDCTQKMSPGARNSRIVALENMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNMMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSSMLKKSEEQKAELIHQNSALKKHTMRSSSDQANSGGHNYDLRKQEHRNSVLLLADMDTSDSDYSDVDDANYDWEKSMKRRHGRKRVSKAKGRSSMMVVSDGTNSTNCNLDSSGEGVVLVNETITATTTSVCCSCSRSSYCKTTKCQCRASGGACGLSCGCRPSKCANRGSKSERDESIRPDSVGDVRSGSENDATDEESRDLVSHGARLLQNALAERRPSEAPPAEDGGTKRKPLSDIGNTVAKTNVKKPNQRKKWRKSTIQLVPTPPVSETTATTQKTETEPSEVVNIPLKLPRAMRSAAANGGNLLRERNSDQPEDSVGGNKEQHELTVPKRVDEKENCNR | 1275 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4666785 | 4675934 | + | MC11g0597 | Mch11g0708 | 679642 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch11g0708 | 1275 | Coils | Coil | 404 | 424 | - | - | |
| Mch11g0708 | 1275 | Coils | Coil | 921 | 955 | - | - | |
| Mch11g0708 | 1275 | CDD | KISc_KIF4 | 14 | 362 | - | - | |
| Mch11g0708 | 1275 | ProSitePatterns | Kinesin motor domain signature. | 261 | 272 | IPR019821 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro) | |
| Mch11g0708 | 1275 | Gene3D | Kinesin motor domain | 9 | 394 | IPR036961 | - | |
| Mch11g0708 | 1275 | SMART | CXC_2 | 1059 | 1103 | IPR033467 | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 1099 | 1114 | - | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 1189 | 1216 | - | - | |
| Mch11g0708 | 1275 | Coils | Coil | 589 | 623 | - | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 951 | 973 | - | - | |
| Mch11g0708 | 1275 | Coils | Coil | 791 | 818 | - | - | |
| Mch11g0708 | 1275 | PRINTS | Kinesin heavy chain signature | 316 | 337 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | PRINTS | Kinesin heavy chain signature | 262 | 280 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | PRINTS | Kinesin heavy chain signature | 84 | 105 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | PRINTS | Kinesin heavy chain signature | 220 | 237 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | Coils | Coil | 556 | 583 | - | - | |
| Mch11g0708 | 1275 | Coils | Coil | 737 | 764 | - | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 1098 | 1275 | - | - | |
| Mch11g0708 | 1275 | Coils | Coil | 376 | 396 | - | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 952 | 970 | - | - | |
| Mch11g0708 | 1275 | ProSiteProfiles | Kinesin motor domain profile. | 14 | 361 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | SMART | kinesin_4 | 12 | 369 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | Pfam | Kinesin motor domain | 45 | 361 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Mch11g0708 | 1275 | Coils | Coil | 632 | 697 | - | - | |
| Mch11g0708 | 1275 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 15 | 395 | IPR027417 | - | |
| Mch11g0708 | 1275 | PANTHER | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 9 | 1250 | IPR027640 | GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER) | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 1122 | 1136 | - | - | |
| Mch11g0708 | 1275 | MobiDBLite | consensus disorder prediction | 1243 | 1275 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch11g0708 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0708 | Mch-Chr11:4666785 | Mch8g0611 | Mch-Chr8:4390151 | 3.00E-56 | dispersed | |
| Mch11g0322 | Mch-Chr11:1986942 | Mch11g0708 | Mch-Chr11:4666785 | 7.32E-291 | transposed | |
| Mch3g0344 | Mch-Chr3:5597208 | Mch11g0708 | Mch-Chr11:4666785 | 6.77E-58 | transposed | |
| Mch5g1599 | Mch-Chr5:16918898 | Mch11g0708 | Mch-Chr11:4666785 | 3.31E-54 | transposed | |
| Mch2g1159 | Mch-Chr2:7895854 | Mch11g0708 | Mch-Chr11:4666785 | 8.70E-55 | transposed | |
| Mch11g0708 | Mch-Chr11:4666785 | Mch8g0271 | Mch-Chr8:1846283 | 1.77E-48 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g516 | . | . | . | . | . | . | . | Bma01g02586 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy04g00208 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bhi09g02497 | . | . | . | . | Mch11g0708 | . | . | . | . | . | . | . | . | . | . | . | Cme04g00238 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009556 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 32 |