Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0709 ATGAGGGAAAAAAGGGTTAAATCATGTAAATGTGTATGTGTCCTGAAAATAAATATCATACGAGAGTGTACAGCTGCCATTTCGCCGACGACTCGCCGTGAGCTGAAGATGGAGGCCTTGGGCAGCTACTCTTTACCCACCGCAACCGCATTTGCCTTCTCTAAACCCTCCGTTTCTTCTTCTAAGCCGCCATTTCTCACCTTCTCTCGTCGAGCCATGCCGGTGTTTGGGGTTCTCAGTGCATCTCGCACCGCCGACGCGGCGCCGTCCGTCGCCGACTCGCCGGACAATCACGCCGACAAGGAGGTCAAGCTTTGGGGCGGCCGTTTCGAGGAGAGCGTCACCGACGCAGTTGAGCGATTTACCGAGTCGATCTCCTACGATAAGCAGCTTTATAAGCACGATATCAGGGGGAGTCGAGCTCATGCTTCTATGCTAGCTAAGCAGGGACTGATGAGTGTTGATGAGAGGGACAGTATTCTTGAAGGTTTGGATGAAATTGAGAGGCGGATTGAAAGTGGTGAGTTTGTTTGGAGAACAGATAGGGAGGATGTTCACATGAACATTGAGGCTGCCCTGATTGATATGATTGGTGAACCTGCAAAGAAGCTGCATACTGCTCGGAGCCGCAATGACCAAGTTTTGACTGATTTTCGATTGTGGTGTCGGGACGCAATTGATAAGATATTAGATGCTATTAAGTACCTTCAGGTTTCCATGGTAACTCTGGCATTGTCGAATGAGGGATTAATCGTTCCGGGTTATACGCATTTACAAAGAGCACAACCCGTTCTTCTCCAGCATCTGCTCTTAGCATTTGTTGAGCAGCTTGAAAGAGATGCTGGTCGTTTATCGGATTGCAGAGTTAGGCTAAATTATTGCCCACTAGGTGCATGTGCGCTGGCTGGCACAGGCCTTCCAATTGATCGTTTTATGACTGCTGATGCTTTAGGGTTCACTGCCCCCTTGAGAAACAGCATTGATGCAGTTTCCGACCGAGATTTTGCCTTAGAGTTTCTTTCTGCCAATGCCATCACTGCTATTCATCTTTCAAGGCTTGGAGAAGAATGGGTGTTGTGGGCTTCTGAAGAGTTTGGATTTATAATGCCAAATGATTCCGTTTCGACCGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTTGTTCGTGGGAAGTCAGCTAGAGTCATTGGAGACTTGGTCACCACTCTCACCTTATGCAAAGGTCTGCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTTGACAGTGTAAAAACAATATTGGGAATGCTTGAAGTGTCTGCTGAGTTTGCTCAGAATATTTCTTACAATCGGGAGAGAATACGGAAAGCTTTACCTGCCGGTTTTCTTGATGCCACAACTCTTGCTGATTACCTCGTGAAGAAGGGAATACCTTTCAGAACAGGTCACGACATAGTTGGGAAGTGTGTGGCCTTGTGTGTCACAAAGAATTGCTGCCTCCAGGACTTGAGTCTCGATGAGCTAAGAAGCATAAGTCCAGTATTCGAAGCGGATGTTTACGAGTTTCTCGGCCCCGAGAATGCCATTAATAAATTTTGTTCATATGGTTCCACAGGAGCAGCCTGTGTTGCTACTCAACTCGAATACTGGGTTAATAAACTCCAAATCGATCAGCAGTAG 1689 47.01 MREKRVKSCKCVCVLKINIIRECTAAISPTTRRELKMEALGSYSLPTATAFAFSKPSVSSSKPPFLTFSRRAMPVFGVLSASRTADAAPSVADSPDNHADKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLAKQGLMSVDERDSILEGLDEIERRIESGEFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDKILDAIKYLQVSMVTLALSNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNYCPLGACALAGTGLPIDRFMTADALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFIMPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISYNRERIRKALPAGFLDATTLADYLVKKGIPFRTGHDIVGKCVALCVTKNCCLQDLSLDELRSISPVFEADVYEFLGPENAINKFCSYGSTGAACVATQLEYWVNKLQIDQQ 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4676116 4680181 - MC11g0598 Mch11g0709 679643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0709 562 Gene3D - 124 331 IPR024083 -
Mch11g0709 562 Hamap Argininosuccinate lyase [argH]. 104 555 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 412 431 - -
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 377 393 - -
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 203 225 - -
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 295 311 - -
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 333 357 - -
Mch11g0709 562 PRINTS Argininosuccinate lyase family signature 244 264 - -
Mch11g0709 562 Pfam Lyase 108 402 IPR022761 -
Mch11g0709 562 Gene3D Fumarase/aspartase (Central domain) 221 550 - -
Mch11g0709 562 Gene3D - 462 534 - -
Mch11g0709 562 NCBIfam argininosuccinate lyase 105 552 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Mch11g0709 562 FunFam Argininosuccinate lyase 104 208 - -
Mch11g0709 562 FunFam Argininosuccinate lyase chloroplastic 331 489 - -
Mch11g0709 562 CDD Argininosuccinate_lyase 124 557 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Mch11g0709 562 PRINTS Fumarate lyase superfamily signature 333 360 IPR000362 -
Mch11g0709 562 PRINTS Fumarate lyase superfamily signature 204 222 IPR000362 -
Mch11g0709 562 PRINTS Fumarate lyase superfamily signature 377 393 IPR000362 -
Mch11g0709 562 PRINTS Fumarate lyase superfamily signature 249 267 IPR000362 -
Mch11g0709 562 FunFam Argininosuccinate lyase 463 534 - -
Mch11g0709 562 ProSitePatterns Fumarate lyases signature. 377 386 IPR020557 GO:0003824(InterPro)
Mch11g0709 562 Pfam Argininosuccinate lyase C-terminal 465 533 IPR029419 -
Mch11g0709 562 SUPERFAMILY L-aspartase-like 105 557 IPR008948 GO:0003824(InterPro)
Mch11g0709 562 PANTHER ARGININOSUCCINATE LYASE 98 560 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0709 K01755 - - csv:101205167 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0709 Mch-Chr11:4676116 Mch8g0270 Mch-Chr8:1840808 5.76E-288 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54