Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0720 | ATGGCAGGTGCGATACTCCAATTGAACATTCAGAATCATCATGTAGTTATGGACAATGGTATATTACAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATCAAATACAACAGCATTGATAATGTTTTAGAAGTTGATGATAAGGAAAATCATAGAGGGTACTGGGACCTTGTGTGGAACTCGGGGACTGGAGGAACAACGGGAACGTTCGATGAGATGAAAGGAAAAGAATTTGAAGTGATAGTGCAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGATAAGGCCGTTCCCTTAAACATTGATAAAAGGTTCATAATGCTTCGTAATTCCTCTGGATTTTATTCCTATGCCATCTATGAGCACTTGAAGGAATGGCCTCCATTCAACCTTCCCCAAACTAGGATTGTGTTCAAGCTAAGAAAAGACAAGTTTCATTATATGGCAATAGCAGATAACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTGCGTCACAGAGGCAAAACCTTGGACTTTCCAGAGGCTGTAAAGCTAGTCAATCCTAAAGAACCTCAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTGCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCTCTCAAACAGAACCTTACTTCTCATGTGGGACCATATGCTCTTGCTATGTTCCTCAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAACTCAATCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTCTATATCTAAATTCTGTTACTGATGGAGGTGACCCACTTTCTTTGTGGAAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCATATTCTTTTCCAGCTTCTGAGGATTTTCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTGTTTGTCCTTGACAGATACGTTAGCCAAGATCAAACGCCAGCAACCGACGCTTATGTGGGACTGGCAGCACCAGGAGAAGCTGGATCGTGGCAGACAGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGACGCAGATGGCTCGTTTAGCATCGAAAATGCACGCATCGGCGACTACAACCTTTATGCTTGGGTTCCCGGTTTCATTGGCGATTATCGTTACGACGTCATCGTTAGCATCTCCGCAGGTAGTGATATGGACGTGGGTGATCTTGTGTATGAGCCGCCCAGGAACGGGCCTACATTGTGGGAAATAGGCATTCCTGATCGATCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAATTATATCAACAAATTGTACGTCGATCATCCTGATAGATTTAGGCAATATGGATTGTGGGAAAGATATGCAGAATTGTATCCTGATGCAGACTTGGTATATACGGTTGGTGTTAGTGACTACACAAAAGATTGGTTTTTTGCTCATGTTAATAGAACGAGAAATGATGGTTCACATCTTAGCACCACGTGGCAAATTAAGTTTACAGTTGATAACGTAGATAAGAATGACGCCTATACGTTGCGAGTGGCTCTCGCTACTGCCAATGTTGCTGAATTACAGGTAAACGATCCAGAAGCAAAGCCAGCTGTATTCACGACAGGACAGATTGGGCACGACAATACAATAGCTAGGCATGGAATTCATGGACTTTATCGACTGTACAGTGTCGACATGTCGGGATCTCTGCTTGTAGAAGGAGAAAACACCATCTTCCTCTCGCAAATTATAAGCAGTTCTTCTTTCAATGGTGTTATGTATGATTATATCCGCCTCGAAGCCCCCCCATCT | 1893 | 43.11 | MAGAILQLNIQNHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKENHRGYWDLVWNSGTGGTTGTFDEMKGKEFEVIVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKTLDFPEAVKLVNPKEPQFKGEVDDKYQYSCENKDLKVHGWISMDPAVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLNPDEPWKKVFGPVFLYLNSVTDGGDPLSLWKDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVSQDQTPATDAYVGLAAPGEAGSWQTENKGYQFWTKTDADGSFSIENARIGDYNLYAWVPGFIGDYRYDVIVSISAGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPNYINKLYVDHPDRFRQYGLWERYAELYPDADLVYTVGVSDYTKDWFFAHVNRTRNDGSHLSTTWQIKFTVDNVDKNDAYTLRVALATANVAELQVNDPEAKPAVFTTGQIGHDNTIARHGIHGLYRLYSVDMSGSLLVEGENTIFLSQIISSSSFNGVMYDYIRLEAPPS | 631 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4797070 | 4802328 | - | MC11g0609 | Mch11g0720 | 679654 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0720 | 631 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Mch11g0720 | 631 | Gene3D | - | 328 | 427 | - | - | |
Mch11g0720 | 631 | Pfam | Rhamnogalacturonate lyase family | 4 | 200 | IPR010325 | - | |
Mch11g0720 | 631 | SUPERFAMILY | Starch-binding domain-like | 328 | 425 | IPR013784 | GO:0030246(InterPro) | |
Mch11g0720 | 631 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 626 | IPR029411 | - | |
Mch11g0720 | 631 | SUPERFAMILY | Galactose mutarotase-like | 12 | 291 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Mch11g0720 | 631 | Gene3D | - | 438 | 627 | - | - | |
Mch11g0720 | 631 | CDD | RGL4_C | 442 | 627 | - | - | |
Mch11g0720 | 631 | Gene3D | - | 6 | 292 | IPR014718 | GO:0030246(InterPro) | |
Mch11g0720 | 631 | CDD | RGL4_N | 14 | 301 | - | - | |
Mch11g0720 | 631 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 425 | IPR029413 | - | |
Mch11g0720 | 631 | SUPERFAMILY | Galactose-binding domain-like | 437 | 627 | IPR008979 | - | |
Mch11g0720 | 631 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - | |
Mch11g0720 | 631 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 6 | 630 | IPR051850 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0720 | Mch-Chr11:4797070 | Mch1g1747 | Mch-Chr1:17975037 | 2.49E-237 | dispersed | |
Mch11g0720 | Mch-Chr11:4797070 | Mch11g0722 | Mch-Chr11:4811154 | 1.36E-258 | proximal | |
Mch11g0720 | Mch-Chr11:4797070 | Mch11g0721 | Mch-Chr11:4803313 | 9.60E-60 | tandem | |
Mch1g1361 | Mch-Chr1:15568781 | Mch11g0720 | Mch-Chr11:4797070 | 5.98E-256 | wgd | |
Mch11g0720 | Mch-Chr11:4797070 | Mch8g0257 | Mch-Chr8:1723657 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0720 | K18195 | - | csv:101204193 | 1194.49 |