Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0720 ATGGCAGGTGCGATACTCCAATTGAACATTCAGAATCATCATGTAGTTATGGACAATGGTATATTACAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATCAAATACAACAGCATTGATAATGTTTTAGAAGTTGATGATAAGGAAAATCATAGAGGGTACTGGGACCTTGTGTGGAACTCGGGGACTGGAGGAACAACGGGAACGTTCGATGAGATGAAAGGAAAAGAATTTGAAGTGATAGTGCAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGATAAGGCCGTTCCCTTAAACATTGATAAAAGGTTCATAATGCTTCGTAATTCCTCTGGATTTTATTCCTATGCCATCTATGAGCACTTGAAGGAATGGCCTCCATTCAACCTTCCCCAAACTAGGATTGTGTTCAAGCTAAGAAAAGACAAGTTTCATTATATGGCAATAGCAGATAACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTGCGTCACAGAGGCAAAACCTTGGACTTTCCAGAGGCTGTAAAGCTAGTCAATCCTAAAGAACCTCAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTGCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCTCTCAAACAGAACCTTACTTCTCATGTGGGACCATATGCTCTTGCTATGTTCCTCAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAACTCAATCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTCTATATCTAAATTCTGTTACTGATGGAGGTGACCCACTTTCTTTGTGGAAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCATATTCTTTTCCAGCTTCTGAGGATTTTCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTGTTTGTCCTTGACAGATACGTTAGCCAAGATCAAACGCCAGCAACCGACGCTTATGTGGGACTGGCAGCACCAGGAGAAGCTGGATCGTGGCAGACAGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGACGCAGATGGCTCGTTTAGCATCGAAAATGCACGCATCGGCGACTACAACCTTTATGCTTGGGTTCCCGGTTTCATTGGCGATTATCGTTACGACGTCATCGTTAGCATCTCCGCAGGTAGTGATATGGACGTGGGTGATCTTGTGTATGAGCCGCCCAGGAACGGGCCTACATTGTGGGAAATAGGCATTCCTGATCGATCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAATTATATCAACAAATTGTACGTCGATCATCCTGATAGATTTAGGCAATATGGATTGTGGGAAAGATATGCAGAATTGTATCCTGATGCAGACTTGGTATATACGGTTGGTGTTAGTGACTACACAAAAGATTGGTTTTTTGCTCATGTTAATAGAACGAGAAATGATGGTTCACATCTTAGCACCACGTGGCAAATTAAGTTTACAGTTGATAACGTAGATAAGAATGACGCCTATACGTTGCGAGTGGCTCTCGCTACTGCCAATGTTGCTGAATTACAGGTAAACGATCCAGAAGCAAAGCCAGCTGTATTCACGACAGGACAGATTGGGCACGACAATACAATAGCTAGGCATGGAATTCATGGACTTTATCGACTGTACAGTGTCGACATGTCGGGATCTCTGCTTGTAGAAGGAGAAAACACCATCTTCCTCTCGCAAATTATAAGCAGTTCTTCTTTCAATGGTGTTATGTATGATTATATCCGCCTCGAAGCCCCCCCATCT 1893 43.11 MAGAILQLNIQNHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKENHRGYWDLVWNSGTGGTTGTFDEMKGKEFEVIVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKTLDFPEAVKLVNPKEPQFKGEVDDKYQYSCENKDLKVHGWISMDPAVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLNPDEPWKKVFGPVFLYLNSVTDGGDPLSLWKDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVSQDQTPATDAYVGLAAPGEAGSWQTENKGYQFWTKTDADGSFSIENARIGDYNLYAWVPGFIGDYRYDVIVSISAGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPNYINKLYVDHPDRFRQYGLWERYAELYPDADLVYTVGVSDYTKDWFFAHVNRTRNDGSHLSTTWQIKFTVDNVDKNDAYTLRVALATANVAELQVNDPEAKPAVFTTGQIGHDNTIARHGIHGLYRLYSVDMSGSLLVEGENTIFLSQIISSSSFNGVMYDYIRLEAPPS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4797070 4802328 - MC11g0609 Mch11g0720 679654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0720 631 CDD RGL4_M 331 430 IPR029413 -
Mch11g0720 631 Gene3D - 328 427 - -
Mch11g0720 631 Pfam Rhamnogalacturonate lyase family 4 200 IPR010325 -
Mch11g0720 631 SUPERFAMILY Starch-binding domain-like 328 425 IPR013784 GO:0030246(InterPro)
Mch11g0720 631 Pfam Polysaccharide lyase family 4, domain III 440 626 IPR029411 -
Mch11g0720 631 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Mch11g0720 631 Gene3D - 438 627 - -
Mch11g0720 631 CDD RGL4_C 442 627 - -
Mch11g0720 631 Gene3D - 6 292 IPR014718 GO:0030246(InterPro)
Mch11g0720 631 CDD RGL4_N 14 301 - -
Mch11g0720 631 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Mch11g0720 631 SUPERFAMILY Galactose-binding domain-like 437 627 IPR008979 -
Mch11g0720 631 FunFam Rhamnogalacturonate lyase B 328 427 - -
Mch11g0720 631 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 630 IPR051850 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0720 Mch-Chr11:4797070 Mch1g1747 Mch-Chr1:17975037 2.49E-237 dispersed
Mch11g0720 Mch-Chr11:4797070 Mch11g0722 Mch-Chr11:4811154 1.36E-258 proximal
Mch11g0720 Mch-Chr11:4797070 Mch11g0721 Mch-Chr11:4803313 9.60E-60 tandem
Mch1g1361 Mch-Chr1:15568781 Mch11g0720 Mch-Chr11:4797070 5.98E-256 wgd
Mch11g0720 Mch-Chr11:4797070 Mch8g0257 Mch-Chr8:1723657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0720 K18195 - csv:101204193 1194.49