Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0722 ATGGCTGTAGCTGATAACAGGCAGAGATTCATGCCGCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCCGAAGCCGTCTTACTTACTAATCCCAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCATGTGAAAACAAAGACTTAAAGGTCCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACACCCAGTGATGAGTTTCGGTCAGGCGGACCTCTTAAGCAAAGTCTAACATCACATGTGGGACCTACAACCCTTGCTATATTTCTTAGTGCTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCCGGTGAGCCATGGAAGAAGGTTTTTGGCCCTGTTTTTCTCTATTTTAATTCCACGTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACGGAAGTTCAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTGGATCAACGGGGTACTGTTAGTGGTAGACTACTGGTTTTTGACAGGTATGTTAGTCAAGACTATCTGCCTGCCAGTGGAGCCTTTGTAGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACGCTGGCGACTATAATCTATATGCGTGGGTCCACGGCTTTATTGGAGATTATCGTTGTGATGCTCTCATTAACATAAACCAAGGATCTTGCATTGAAATGGGCGACCTCGTATATGAACCTCCAAGAGATGGGCCCACACTTTGGGAAATAGGCATTCCTGATCGCTCTGCATCTGAGTTCTATGCTCCTGATCCTAACCCGATACATATTAATAACCTCTTTGTAAACCATCCAGACAGGTTCCGGCAATATGGATTGTGGGACAGATATGCTGAATTATACCCTGACGAGGATTTAGTATACACAGTTGGCACAAGCGATTATAGTAAAGATTGGTTCTTCGCTCAGGTCCCAAGGAAGACAAACAGTAACGCGCATCAAGGAACTACTTGGCAAATCAAATTCAAACTCGATAGTGTGGATCACAAGAGTATGTATATGCTACGAGTCGCGATTGCATCTGCAACTCTTGCTGAATTGCAGGTCCGGATTAATGACCCGAGATCAAAGCGACCTCTGTTTACGAGTGGGTTGATAGGGAGGGACAACTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTACAGCGTGGGGATAGCAGGCTCTCATCTTGTTGAAGGAGATAACACGATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATGTATGATTACATCCGTCTGGAAGGTCCCCCAACTATGTGA 1440 45.35 MAVADNRQRFMPLPDDRLSGRCQTLAYPEAVLLTNPKNPQLKGEVDDKYQYSCENKDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYFNSTSVGDDPFWLWEDAKIQMMTEVQSWPYSFPASEDFPKVDQRGTVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHAGDYNLYAWVHGFIGDYRCDALININQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYAPDPNPIHINNLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNSNAHQGTTWQIKFKLDSVDHKSMYMLRVAIASATLAELQVRINDPRSKRPLFTSGLIGRDNSIARHGIHGLYWLYSVGIAGSHLVEGDNTIFLTQPRCTSPFQGIMYDYIRLEGPPTM 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4811154 4817308 - MC11g_new0113 Mch11g0722 679656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0722 479 Pfam Polysaccharide lyase family 4, domain III 285 473 IPR029411 -
Mch11g0722 479 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 477 IPR051850 -
Mch11g0722 479 CDD RGL4_C 287 474 - -
Mch11g0722 479 FunFam Rhamnogalacturonate lyase B 173 272 - -
Mch11g0722 479 CDD RGL4_N 15 138 - -
Mch11g0722 479 CDD RGL4_M 176 275 IPR029413 -
Mch11g0722 479 Gene3D - 31 151 IPR014718 GO:0030246(InterPro)
Mch11g0722 479 Gene3D - 174 258 - -
Mch11g0722 479 SUPERFAMILY Galactose-binding domain-like 282 474 IPR008979 -
Mch11g0722 479 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Mch11g0722 479 SUPERFAMILY Starch-binding domain-like 174 265 IPR013784 GO:0030246(InterPro)
Mch11g0722 479 Pfam Polysaccharide lyase family 4, domain II 199 270 IPR029413 -
Mch11g0722 479 Gene3D - 283 474 - -
Mch11g0722 479 SUPERFAMILY Galactose mutarotase-like 47 141 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0722 Mch-Chr11:4811154 Mch8g0257 Mch-Chr8:1723657 4.87E-276 dispersed
Mch11g0720 Mch-Chr11:4797070 Mch11g0722 Mch-Chr11:4811154 1.36E-258 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0722 K18195 - csv:101203947 944.88