Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0724 | ATGGGGAGAGGCAAGATTGTGATTAGGAGGATCGACAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGTAGGAACGGACTGCTGAAGAAGGCGAAAGAACTTGCGATCTTGTGCGACGCGGAGGTAGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACGCTAATAGAACGATATAACAAAACAAAAGAGGAGCAACATCAGCTTGGGATCTCGACTTCTGAGGTTAAGTACTGGCAAAGGGAAGCAGCAATGTTACGACAGCAACTTCAGAGCTTACATGAAAACCATCGGCAAATGATGGGTGAAGAGCTGACTGGCCTTAGCGTCAAAGATCTACAGAATCTAGAAAATCAACTAGAGATAAGTCTACGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGAGCTAAACAGAAAGGGAAACCTTATTCACCAAGACAATATGGAACTTTATAAGAAGGTAAACTTAATTCATCAAGAAAACTTGGAATTATACAAAAAGGTCTATGGAACAAAGGGTGCCAATGGAGCACACACAAGCAGTCTAACAAACGGACTTGGCGTTGGAGAGGAGGCAGATATACCTATCAACCTTCAACTCAGTCAGCCACAAAATCATAAGGCACCAGAAAGAGCTACAAAACTGGGG | 696 | 43.68 | MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEQHQLGISTSEVKYWQREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGNLIHQDNMELYKKVNLIHQENLELYKKVYGTKGANGAHTSSLTNGLGVGEEADIPINLQLSQPQNHKAPERATKLG | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4832939 | 4848859 | + | MC11g0611 | Mch11g0724 | 679658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0724 | 232 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g0724 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 199 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch11g0724 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Mch11g0724 | 232 | MobiDBLite | consensus disorder prediction | 213 | 232 | - | - | |
Mch11g0724 | 232 | Coils | Coil | 86 | 113 | - | - | |
Mch11g0724 | 232 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch11g0724 | 232 | SUPERFAMILY | SRF-like | 2 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0724 | 232 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0380 | Mch-Chr10:2516375 | Mch11g0724 | Mch-Chr11:4832939 | 1.36E-75 | dispersed | |
Mch11g0724 | Mch-Chr11:4832939 | Mch1g1976 | Mch-Chr1:19399983 | 3.05E-45 | dispersed | |
Mch11g0149 | Mch-Chr11:937908 | Mch11g0724 | Mch-Chr11:4832939 | 4.19E-29 | transposed | |
Mch1g1360 | Mch-Chr1:15559663 | Mch11g0724 | Mch-Chr11:4832939 | 1.59E-70 | wgd | |
Mch11g0724 | Mch-Chr11:4832939 | Mch8g0275 | Mch-Chr8:1878009 | 3.32E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42590 | PF01486 | K-box | 3.60E-26 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0724 | K09264 | - | csv:101203545 | 413.69 |