Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0724 ATGGGGAGAGGCAAGATTGTGATTAGGAGGATCGACAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGTAGGAACGGACTGCTGAAGAAGGCGAAAGAACTTGCGATCTTGTGCGACGCGGAGGTAGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACGCTAATAGAACGATATAACAAAACAAAAGAGGAGCAACATCAGCTTGGGATCTCGACTTCTGAGGTTAAGTACTGGCAAAGGGAAGCAGCAATGTTACGACAGCAACTTCAGAGCTTACATGAAAACCATCGGCAAATGATGGGTGAAGAGCTGACTGGCCTTAGCGTCAAAGATCTACAGAATCTAGAAAATCAACTAGAGATAAGTCTACGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGAGCTAAACAGAAAGGGAAACCTTATTCACCAAGACAATATGGAACTTTATAAGAAGGTAAACTTAATTCATCAAGAAAACTTGGAATTATACAAAAAGGTCTATGGAACAAAGGGTGCCAATGGAGCACACACAAGCAGTCTAACAAACGGACTTGGCGTTGGAGAGGAGGCAGATATACCTATCAACCTTCAACTCAGTCAGCCACAAAATCATAAGGCACCAGAAAGAGCTACAAAACTGGGG 696 43.68 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEQHQLGISTSEVKYWQREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGNLIHQDNMELYKKVNLIHQENLELYKKVYGTKGANGAHTSSLTNGLGVGEEADIPINLQLSQPQNHKAPERATKLG 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4832939 4848859 + MC11g0611 Mch11g0724 679658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0724 232 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g0724 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g0724 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mch11g0724 232 MobiDBLite consensus disorder prediction 213 232 - -
Mch11g0724 232 Coils Coil 86 113 - -
Mch11g0724 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch11g0724 232 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0724 232 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0380 Mch-Chr10:2516375 Mch11g0724 Mch-Chr11:4832939 1.36E-75 dispersed
Mch11g0724 Mch-Chr11:4832939 Mch1g1976 Mch-Chr1:19399983 3.05E-45 dispersed
Mch11g0149 Mch-Chr11:937908 Mch11g0724 Mch-Chr11:4832939 4.19E-29 transposed
Mch1g1360 Mch-Chr1:15559663 Mch11g0724 Mch-Chr11:4832939 1.59E-70 wgd
Mch11g0724 Mch-Chr11:4832939 Mch8g0275 Mch-Chr8:1878009 3.32E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42590 PF01486 K-box 3.60E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0724 K09264 - csv:101203545 413.69