Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0736 | ATGGAGCTGATGATGAATGAACAATATTTGTTAGACGAAGTTGCAGCTCTTAGAAGAGAGATGAATTGGGAATTGGCGCTGCCCACAGAAATTAGTGGGTGGAATACTAACAATTTGGTTCCAGATTCTGCCTCTGCCACCAGCTTCTGTTTGCCGCCGCTGGACGACGTGCACAATAACAATGTTAACAGCTACCTCCTCAGTAGTGACGATTTGATTCCTTTTCACGGCGGCGCGTCGATTTTGTCGTCGCTGGAGGGTTGTGATAACGGGGAGTATTATCCGATCGCTAACATGGAGGAGGAGGAGCTTGGGATTTTGGAGGACGAGATTCATAACCTTGAAGTTCAGGCAAGTTGTTGTAAGGCTGAGCCCGTTGCCGTGGTTCAGTCTCCTGAAGCCGTCCCAACTTTCAGCGCCGGCGCGTGCGCCCACAAGAGTAGTAAGAAATTGCAAGGCCAGCCGTCGAAGAATCTGATGGCGGAGAGGCGCCGGAGGAAGCGCCTCAACGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATAAGCAAGATGGACAGAACTGCGATTCTGGCGGATGCTATAGATTACGTGAAGGAATTACTTGAGAAAATCAGCAATTTGCAGAGGGAAATTGAGGTGGGGAATCCAAATCCGAGCAAGTTGGGGAGTAGTAGTAGTGTGGGCATTTTGAGAGATGTGAAACCGAATGATTATTTGGTCAGAAATTCGCCCAAGTTTAATGTGGAAAGGAGAGACATGGACACTCGGATTGAGGTTTGCTGTGCGCCAAAGCCTGGGTTGTTGTTGTCTACAGTACATACTCTTGAAGCATTGGGGCTTGACATTCAACACTGTGTCATCAGCTCTTTCAATGATTTTGCTATTCAAGCTTCTTGCTCTGAGGAAATGGACCACAGGACAATGGTGAGCACAGACGAAGTAAAGCAAGCATTATTTGAAACTGCTGGATATGGAGGAAGATGCCTGTAG | 996 | 48.09 | MELMMNEQYLLDEVAALRREMNWELALPTEISGWNTNNLVPDSASATSFCLPPLDDVHNNNVNSYLLSSDDLIPFHGGASILSSLEGCDNGEYYPIANMEEEELGILEDEIHNLEVQASCCKAEPVAVVQSPEAVPTFSAGACAHKSSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKISNLQREIEVGNPNPSKLGSSSSVGILRDVKPNDYLVRNSPKFNVERRDMDTRIEVCCAPKPGLLLSTVHTLEALGLDIQHCVISSFNDFAIQASCSEEMDHRTMVSTDEVKQALFETAGYGGRCL | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4943886 | 4946809 | + | MC11g0616 | Mch11g0736 | 679670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0736 | 331 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 202 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0736 | 331 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 202 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0736 | 331 | CDD | ACT_UUR-ACR-like | 257 | 320 | - | - | |
Mch11g0736 | 331 | Pfam | Plant bHLH transcription factor, ACT-like domain | 249 | 320 | IPR054502 | - | |
Mch11g0736 | 331 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 157 | 219 | IPR036638 | GO:0046983(InterPro) | |
Mch11g0736 | 331 | Gene3D | - | 145 | 217 | IPR036638 | GO:0046983(InterPro) | |
Mch11g0736 | 331 | SMART | finulus | 159 | 208 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0736 | 331 | Coils | Coil | 97 | 117 | - | - | |
Mch11g0736 | 331 | Coils | Coil | 192 | 212 | - | - | |
Mch11g0736 | 331 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 136 | 326 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0736 | Mch-Chr11:4943886 | Mch8g1350 | Mch-Chr8:9987288 | 1.51E-37 | dispersed | |
Mch3g1317 | Mch-Chr3:15969686 | Mch11g0736 | Mch-Chr11:4943886 | 9.11E-37 | transposed | |
Mch4g0479 | Mch-Chr4:3075545 | Mch11g0736 | Mch-Chr11:4943886 | 5.09E-18 | transposed | |
Mch8g2872 | Mch-Chr8:31541311 | Mch11g0736 | Mch-Chr11:4943886 | 6.08E-06 | transposed | |
Mch1g1351 | Mch-Chr1:15515638 | Mch11g0736 | Mch-Chr11:4943886 | 6.10E-70 | wgd | |
Mch11g0736 | Mch-Chr11:4943886 | Mch8g0296 | Mch-Chr8:2051861 | 2.88E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42591 | PF00010 | HLH | 7.70E-10 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0736 | - | - | - | 0.0 |