Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0736 ATGGAGCTGATGATGAATGAACAATATTTGTTAGACGAAGTTGCAGCTCTTAGAAGAGAGATGAATTGGGAATTGGCGCTGCCCACAGAAATTAGTGGGTGGAATACTAACAATTTGGTTCCAGATTCTGCCTCTGCCACCAGCTTCTGTTTGCCGCCGCTGGACGACGTGCACAATAACAATGTTAACAGCTACCTCCTCAGTAGTGACGATTTGATTCCTTTTCACGGCGGCGCGTCGATTTTGTCGTCGCTGGAGGGTTGTGATAACGGGGAGTATTATCCGATCGCTAACATGGAGGAGGAGGAGCTTGGGATTTTGGAGGACGAGATTCATAACCTTGAAGTTCAGGCAAGTTGTTGTAAGGCTGAGCCCGTTGCCGTGGTTCAGTCTCCTGAAGCCGTCCCAACTTTCAGCGCCGGCGCGTGCGCCCACAAGAGTAGTAAGAAATTGCAAGGCCAGCCGTCGAAGAATCTGATGGCGGAGAGGCGCCGGAGGAAGCGCCTCAACGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATAAGCAAGATGGACAGAACTGCGATTCTGGCGGATGCTATAGATTACGTGAAGGAATTACTTGAGAAAATCAGCAATTTGCAGAGGGAAATTGAGGTGGGGAATCCAAATCCGAGCAAGTTGGGGAGTAGTAGTAGTGTGGGCATTTTGAGAGATGTGAAACCGAATGATTATTTGGTCAGAAATTCGCCCAAGTTTAATGTGGAAAGGAGAGACATGGACACTCGGATTGAGGTTTGCTGTGCGCCAAAGCCTGGGTTGTTGTTGTCTACAGTACATACTCTTGAAGCATTGGGGCTTGACATTCAACACTGTGTCATCAGCTCTTTCAATGATTTTGCTATTCAAGCTTCTTGCTCTGAGGAAATGGACCACAGGACAATGGTGAGCACAGACGAAGTAAAGCAAGCATTATTTGAAACTGCTGGATATGGAGGAAGATGCCTGTAG 996 48.09 MELMMNEQYLLDEVAALRREMNWELALPTEISGWNTNNLVPDSASATSFCLPPLDDVHNNNVNSYLLSSDDLIPFHGGASILSSLEGCDNGEYYPIANMEEEELGILEDEIHNLEVQASCCKAEPVAVVQSPEAVPTFSAGACAHKSSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKISNLQREIEVGNPNPSKLGSSSSVGILRDVKPNDYLVRNSPKFNVERRDMDTRIEVCCAPKPGLLLSTVHTLEALGLDIQHCVISSFNDFAIQASCSEEMDHRTMVSTDEVKQALFETAGYGGRCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4943886 4946809 + MC11g0616 Mch11g0736 679670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0736 331 Pfam Helix-loop-helix DNA-binding domain 160 202 IPR011598 GO:0046983(InterPro)
Mch11g0736 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Mch11g0736 331 CDD ACT_UUR-ACR-like 257 320 - -
Mch11g0736 331 Pfam Plant bHLH transcription factor, ACT-like domain 249 320 IPR054502 -
Mch11g0736 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983(InterPro)
Mch11g0736 331 Gene3D - 145 217 IPR036638 GO:0046983(InterPro)
Mch11g0736 331 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
Mch11g0736 331 Coils Coil 97 117 - -
Mch11g0736 331 Coils Coil 192 212 - -
Mch11g0736 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 326 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0736 Mch-Chr11:4943886 Mch8g1350 Mch-Chr8:9987288 1.51E-37 dispersed
Mch3g1317 Mch-Chr3:15969686 Mch11g0736 Mch-Chr11:4943886 9.11E-37 transposed
Mch4g0479 Mch-Chr4:3075545 Mch11g0736 Mch-Chr11:4943886 5.09E-18 transposed
Mch8g2872 Mch-Chr8:31541311 Mch11g0736 Mch-Chr11:4943886 6.08E-06 transposed
Mch1g1351 Mch-Chr1:15515638 Mch11g0736 Mch-Chr11:4943886 6.10E-70 wgd
Mch11g0736 Mch-Chr11:4943886 Mch8g0296 Mch-Chr8:2051861 2.88E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42591 PF00010 HLH 7.70E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0736 - - - 0.0