Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0740 ATGGCGGGAGCTCTCAGAGAAAGAGCACTCTCTCTCATGGCCGCCGCTAACAACCATGGTGATTTAACGGTCAAGATTTCATCTTTGAGGCAGGTGAAGGATATTATACTGTCCATCGAGCCATCGTTCGCCGCAGAGCTCTACTCCTACTTGGTGGAGCTTCAGTCTTCCCCCGAGAGCCTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGACTAAGAGCCATGGAACATTCGCCTCTATTAATGTCAGTTTTATTGGCATCTTTAAAGGATGAAGACCCTATTGTAGCAAGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTGTTTTAAGAGAGATGACAATGCAGTTGCATCGGCGAGGTAAAGTTGAGAGATGGCTTGAAGAACTGTGGATGAGAATGTTGAAGTTTAAAGACGATATTTTGGCAATTGCTATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACCTCTGATACAAATGATCCACAGAAACCTGTCTCAGAAGGAAATGGGGATATTTTTAATATTTCATGGCTAGCTGGTGGTTTTCCTATTTTGGATCCAGTTGGGCTCATGTCGGAAGCTAATAGGATGCTTGGCATTCTGTTAAATTTGTTGCAGTCCAGTTCTGTTCCTGGTACATACACAGTTACAGTTGTCAGTTGTTTAGCAGCTATAGCAAGGAAGAGACCGGTTCATTATGGTAACATTCTATCTGCACTGCTGGAATTTATTCCGAGTTTTGAGATGTTAAAAGGGCGTCATGCTGCCAGCGTTCAGTATTCCATAAGATCTGCGCTTATGGGATTCCTTAGGTGTATGCATCCAGCTTTTGTAGAGCTTGATTTTCTGTTGGTTCAGTCAAGAGACAGATTGCTAAAGGCTTTAAGAGCTATAAATGCTGGAGATGCTGCAGATCAAGTGATCAGGCAAGTGGACAAAATGGTGAAGGCCGCAGATCGAGCTTCACGTGATGTTTGGTTGGGCAAGGATGATCAATCATCAAATCAGCTTAATGTATCAGTGGATCTAACAAGAAAAAGACCTAGGCCTCTAGATGATGAAGAACTTTCCAATGGTCGTGATGTGGTTTCCAAGCAAATTCGCTTTGGTCCTGATGTTCACCTAGTTTTTGCTGCTCAAAAAGATGGTTCTCTGCAGAATGCCATCTCTAATGGGACGCCCCCTGATATTCATGCTTTAGATGTTGAATTGACTCCGGCAGAGCAAATGATTGCAATGATTGGTGCCTTACTCGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTCTGATTTCAAATATTCATCCCGATTTATTGGCTGATATTGTCATAACCAACATGAAGAACTTGCCTAAAGCCTCCCCTCCTTTAACAAGGCATGGAGACTTACCTGTAACTCGTCAAGGAAGTAGTCATGTGCAGGTTCTGGCGTCGTCAGCCCCATCAAGTTCTGTTCAAACTCCAGTTGCCACTGCACAAGTTCCTTTCTCTTTGGCCATCTCAGCTGGTTCAACCTTTGCTGATTCTACTGTGAATAGTCTCCCTGTTGATTCTAAACGGGATCCAAGAAGGGATCCCCGTCGCCTTGATCCTCGCCGTGTTGGAGTATCTTCTGCTTCTAGTGTGGAGGAGACAACTTCAAATATTCCTGATGTTGATGGCTCCATATCTTTGGTAAAACCTGCTTCAGCTCCTGTTTCTGTGACAATTGAGAATCCCTCAGTACCTTTAATATCAAAAATGAAAGTTGAAGAAAAAACCGTAGAGATTCCAGTTGGGTTTGGAACAGACCAATCGACCCCCAAATCAAAATCTCCTGATGGAGCTGAGAAAGTTGACACTATATTAGAGGTTAACGACTCTCTGGATCCCACGCCTTCTGCTGTTGGAAAAGCGGATGAAGATTTAGTTGCAGTTAATTTGTTCGATGAGTCAGCAACAAAGAGGGATGATACATCATCCTCCACAGAGTACAGTCAGTATTCTCCATCAGTTACGAATGCAGCAGTATCTGAAGACACCTGTCAGGAATTGCCTCTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAATAACTGTAAGAAATTTGGCTGCTGAAAAGATATTTGATTCATGCAAGAATTTAAATGGGGCAGAATGCCATCAGATACGCTTGGCAGTAATTGCTCGATTGGTTGCTCAGGTTGATGCTGATGATTATATTGTTGGAATGTTGGAAAAACAAGTTGCTCTTGATTACCAACAGCAAAAGGGGCATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTTGAAAGTTCTTCTTCTGCTGTGTACGAAAAGTTTCTTCTAGTTGTGGCAAAATCGTTGCTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTTCCAGTATTGCCTGACTCTACGTTGGAACTATTACATAACCTTTGCTACTCTGATGTTACTGACAACCATGGGAAGGATACTCCTGATATTGAACGTGTCACTCAGGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTCAAGTGTGCTATGCATTCGGAAGTTAAGATTCGAGCAACGGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGAATTGAGCAATATGCAACAAACTTGTTCCTGAATGCGGTAGACAACTTACAGACTGATGCAGAGCCTTCATCATGTGGATCCATTGAACAAAGAACAAGAGGAGAGGGTGAGAGCCAGGAAACAACCATTTGTGCTTCTCAAGTTTCAGATCCTGGAACCTCAGAAATCGATTCCATGAGAAGTTCACAACCTACAGTTCATGGCAGTTCAACCTTGTCATCTTCAGAAGCTGAAAGACACATTTCTCTTCTTTTTGCTCTATGCGTGAAGAAACCTCAACTGCTTCAGCTTGTATTTGATGCTTACGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCATGAACATATCCCCAATCTTATTACGGCCCTAGGGTCATCTGATTCTGAATTGCTTAGAATAATATCAGATCCACCTCAAGGAAGTGAACATCTTTTAGCGTTGGTCCTACAGGTACTAACTCAAGGGACAACACCTTCTTCTGATCTGATCGCAACTGTTCAACATTTATATGAAACTAAACTGAAGGACGTGACAATTCTCATTCCAATGTTGTCCTCGCTTTCCAAAAATGAGGTTTTACCTGTTTTTCCACGGCTGGTTGATCTTCCATTGGAGAAGTTCCAGAGGGCGTTGGCTCACATATTACAGGGTTCAGCATATACACGTCCAGCTTTAACACCTGTTGAAGTATTGATTGCCATCCACAATATAACTCCTGAAAAGGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTAATTCAGGCGATCGATGCTTTTCCGACTTTGGTTGATTTTGTTATGGAGATACTTTCCAAACTTGTAAACAAACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTCTGAAATGTGCATTTCAAACACAGCCTCATTCCTTCCGAGTTCTATTACAGTTACCACCGCCACAACTTGAGAATGCTTTGAACAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCACCACAAAATCTACTCTCTCTAGG 3894 42.58 MAGALRERALSLMAAANNHGDLTVKISSLRQVKDIILSIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDPIVARQSIISGQKLFCGVLREMTMQLHRRGKVERWLEELWMRMLKFKDDILAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKPVSEGNGDIFNISWLAGGFPILDPVGLMSEANRMLGILLNLLQSSSVPGTYTVTVVSCLAAIARKRPVHYGNILSALLEFIPSFEMLKGRHAASVQYSIRSALMGFLRCMHPAFVELDFLLVQSRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDVWLGKDDQSSNQLNVSVDLTRKRPRPLDDEELSNGRDVVSKQIRFGPDVHLVFAAQKDGSLQNAISNGTPPDIHALDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVTRQGSSHVQVLASSAPSSSVQTPVATAQVPFSLAISAGSTFADSTVNSLPVDSKRDPRRDPRRLDPRRVGVSSASSVEETTSNIPDVDGSISLVKPASAPVSVTIENPSVPLISKMKVEEKTVEIPVGFGTDQSTPKSKSPDGAEKVDTILEVNDSLDPTPSAVGKADEDLVAVNLFDESATKRDDTSSSTEYSQYSPSVTNAAVSEDTCQELPLLPPYVDLTPEQQITVRNLAAEKIFDSCKNLNGAECHQIRLAVIARLVAQVDADDYIVGMLEKQVALDYQQQKGHELALHVLYHLHSLDILDSVESSSSAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPVLPDSTLELLHNLCYSDVTDNHGKDTPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKIRATAIRLVANKLYRLSYISDRIEQYATNLFLNAVDNLQTDAEPSSCGSIEQRTRGEGESQETTICASQVSDPGTSEIDSMRSSQPTVHGSSTLSSSEAERHISLLFALCVKKPQLLQLVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSELLRIISDPPQGSEHLLALVLQVLTQGTTPSSDLIATVQHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAYTRPALTPVEVLIAIHNITPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNKQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPTTKSTLSR 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4968092 4991171 + MC11g0620 Mch11g0740 679674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0740 1298 SUPERFAMILY ARM repeat 18 1234 IPR016024 -
Mch11g0740 1298 MobiDBLite consensus disorder prediction 940 993 - -
Mch11g0740 1298 Gene3D - 2 344 IPR011989 -
Mch11g0740 1298 MobiDBLite consensus disorder prediction 558 573 - -
Mch11g0740 1298 MobiDBLite consensus disorder prediction 666 685 - -
Mch11g0740 1298 MobiDBLite consensus disorder prediction 530 574 - -
Mch11g0740 1298 MobiDBLite consensus disorder prediction 537 552 - -
Mch11g0740 1298 Pfam Symplekin/PTA1 N-terminal 96 315 IPR032460 -
Mch11g0740 1298 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 3 1298 - -
Mch11g0740 1298 Pfam Symplekin tight junction protein C terminal 1097 1275 IPR022075 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0740 K06100 - - csv:101202828 2158.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0740 Mch-Chr11:4968092 Mch1g0610 Mch-Chr1:10275597 3.64E-245 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40