Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0758 ATGCTTCTTCGCGCGTCCCCTCTTCTTCGCGGCTCCCACCTGCCATTATCCTCCGGGATTCAGATGGCGCTAGCTGCCTATCTCCCTTTCTATCCCATCTCTCAGAGTTCATCTTCATGGCGATCTTCTTCGCACTTGGCTTTTGTTTGCCAACCGAATGGTTACGACCGCATTTCGGCCAAGAAATCTTTTTCACTATTCGTTCGGAGTTTCAACGTTTTATCTGGAGTATACAGTAATGTCCCAAGGCCTTGTGGAAGGATTTTCTGTGGGCAGAGAGAGTATCGAAAGGTGAGGAGGCGTCCAAAGAGTAAGAACAAGGAATTAGAGCTCAACGTTGGTATCTGTATTGAAGAAGAGCTGCCGGACGACCCAGAAATTTTGAGTATTGCAGAGTTGCTTCGTCTGAATGTTCCCAAGGCTCTGAAATTAGCTTTCAACAATTTGAAGGATTCAGAATACAAAACCCGAGATAGTTCAATAAATGATGTTGGTTTATTTGACAGTGTCGAGTTGTCAGTGCTACTTTGTAACGATGAATTTATTCGTAAACTTAATAAAGAATGGAGGGATGAGGATCATGCAACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTCTTGAGACTGCTGCGAGGCAGGCAGAGGAAAGGGGGCATACACTCCTTGATGAGATTCGGATACTCCTGGTGCATGGGTTGTTACATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGCAGAAATGGAGAAGGAAGAGGAACTGCTTTTGAAGAGTTTAGAATGGAAAGGGAAAGGGCTCATTCAGAGTGCAATCGACGCTGAAACTAATTTAAATTCCGTTGCAGAAGTTTCAGATGACAGGAAAAAAGAAGGAAGTCTTCGATTTTACCGCCCAAGGTTCAGCTACATTTTCTGTGATATGGATGGTACATTGCTTAACAGTAAAAGTCAAATTACTCCAACAACTGCCAATGCTCTGAAAGAGGTCTTGTCAAGGGGTGTGAAAGTTGTTATAGCCACTGGAAAGGCCCGTCAAGCAGCCATAAGCATTTTGGAGAAAGCAGGTTTAGCTGGAAAAGACGGTGCTGTGTCTGAATTTTCTCCGGGAGTTTTCTTACAGGGACTACTTGTTTATGGTCGACAAGGAAAGGAAATTTATAGGCATAACTTAGACCAAGATGTCTGCAGAGAGGCATGCCTTTATTCTGTAGAGAAGAAAGTTCCTCTGATTGCATTTGGTGGAGGTCGTTGCTTAACTCTATTTGATCATCCACTTACTGATTCATTACACACGATATACCATGAGCCCAAGGCAGAGGTCATGCCTTCGGTTGAGGATCTTTTGGATGCTGTTCAAATACAAAAAATTATTTTCTTGGACACTGCCGAGGGAGTTTCACACATCCTACGGCCATACTGGTCAGAAGCATCAGGAGAACAGGCCACGGTTGTTCAAGCTGTACCGGACATGCTTGAGATTGTCCCCCATGGAACCTCAAAAGGTAGTGGAGTAAAAATGCTGCTCGATCATTTGGGTGTTTCTGCTGAGCAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTCGAGCTGGCATCTCTTGGGATTGCTTTGAGCAATGGCTCGGAGAAAACTAAAGCTATTGCTAACATAATTGGTCCCAGCAACGACGAAGATGGCGTTGCAGATGTCATATATCGATACGCATTCTGA 1773 44.05 MLLRASPLLRGSHLPLSSGIQMALAAYLPFYPISQSSSSWRSSSHLAFVCQPNGYDRISAKKSFSLFVRSFNVLSGVYSNVPRPCGRIFCGQREYRKVRRRPKSKNKELELNVGICIEEELPDDPEILSIAELLRLNVPKALKLAFNNLKDSEYKTRDSSINDVGLFDSVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISLETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEAEMEKEEELLLKSLEWKGKGLIQSAIDAETNLNSVAEVSDDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTANALKEVLSRGVKVVIATGKARQAAISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGRQGKEIYRHNLDQDVCREACLYSVEKKVPLIAFGGGRCLTLFDHPLTDSLHTIYHEPKAEVMPSVEDLLDAVQIQKIIFLDTAEGVSHILRPYWSEASGEQATVVQAVPDMLEIVPHGTSKGSGVKMLLDHLGVSAEQVMAIGDGENDIEMLELASLGIALSNGSEKTKAIANIIGPSNDEDGVADVIYRYAF 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5102939 5111224 - MC11g0637 Mch11g0758 679692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0758 590 Gene3D - 321 585 IPR023214 -
Mch11g0758 590 Hamap Endoribonuclease YbeY [ybeY]. 110 286 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Mch11g0758 590 ProSitePatterns Hypothetical cof family signature 2. 539 561 - -
Mch11g0758 590 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 168 282 - -
Mch11g0758 590 Pfam Endoribonuclease YbeY 164 276 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Mch11g0758 590 SFLD C2.B: Phosphomannomutase and Phosphatase Like 321 589 - -
Mch11g0758 590 SUPERFAMILY HAD-like 316 588 IPR036412 -
Mch11g0758 590 CDD HAD_Pase 321 587 - -
Mch11g0758 590 SFLD Haloacid Dehalogenase 321 589 - -
Mch11g0758 590 Gene3D - 407 514 - -
Mch11g0758 590 ProSitePatterns Uncharacterized protein family UPF0054 signature. 246 256 IPR020549 -
Mch11g0758 590 NCBIfam Cof-type HAD-IIB family hydrolase 320 585 IPR000150 GO:0016787(InterPro)
Mch11g0758 590 Pfam haloacid dehalogenase-like hydrolase 321 585 - -
Mch11g0758 590 Gene3D Metalloproteases ("zincins"), catalytic domain 142 279 IPR023091 GO:0004222(InterPro)
Mch11g0758 590 NCBIfam HAD-IIB family hydrolase 320 557 IPR006379 -
Mch11g0758 590 ProSitePatterns Hypothetical cof family signature 1. 320 331 - -
Mch11g0758 590 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 92 566 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Mch11g0758 590 NCBIfam rRNA maturation RNase YbeY 162 277 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0758 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32