Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0759 ATGGTCAGGTGTCCTGAGCTTCTTGACCTGATCTCTAGAGACAGGGAGTGGGACTTGATTAGGAATGGTGCTGAAAGTTCTGTGAGTGAGAACAATAAGCTTGAACTCAGACTTGGACTTCCAGGAGAAGGGGGGCTTGTAGAAGGAAGCAGCTGCTTGAATAGTAACCACGAAAGTGGTGAATTGCCTCTCTCTTCTGCTGAGCTCTTTCCTTCTTGTTTGAACATTAGAAGCAACAAAAGGGCGCTCTATGAAAAAGCTGAAGGAATGGCAGAGGGTGGAATTTGGTTGAATAGAAATGATGAATTCCAACCCCACAAGTTGATTTTCTCTGAGAAAACAGCTGAGAAGGTGTCTCCTCCTACTCCATGCCCAAGTGCTTCCTTATCATCTTCAGCTTTTCAGAGGGAGGCCCAGAAGCTTTCTCTACAATCAAAATCTTCATATTTACAACACTTACTGATGCCTCAGAAATTGGACAAGGTGTCAGAGGAGGCATCAAAGTCAGGCTGTTTGAAAACAGCAGAGTTCCCATACTTAGATGGGAAATCATATCCCAACACTGTTTCAGTTCCTGCAAATTCATCTGAGCCACAACACTCTGACAAAAGGACTTCAGTTGCACCAGCCGTTGGTTGGCCCCCCATCCGTTCGTTCAGGAAGAACTTGGCTGCGCCCCGCTCTTCGAAGCCCAACAGTCTTGGGTTGTCAAAAGAAACTGTGCAGGAGGATAATGGCTCAAAATCTGACTGTTGTAATGGACAAATGTTTGTGAAAGTTTGTATGGATGGGGTTCCCATTGGAAGAAAACTGAATCTCCAAGCTTATGATAGTTATGAGAAACTATCTGCTGGCATAGACGAACTTTTCCACTATCTTCTTGCAGCACAAAGAAACTATCTGGTTGCTGAAGATGGGAGAAAGATGGAGGAAACAACATCGTTTTCTGATTCCAAACATGAAAACAGGCTGTACACTCTAGTTTATTATGATAATGAAGGGGACAGGATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACTGTGAAGAGGCTACATGTGTTAAAGAGCTCTGCCATGGCTACTACTGAAATGAAGTGA 1107 44.08 MVRCPELLDLISRDREWDLIRNGAESSVSENNKLELRLGLPGEGGLVEGSSCLNSNHESGELPLSSAELFPSCLNIRSNKRALYEKAEGMAEGGIWLNRNDEFQPHKLIFSEKTAEKVSPPTPCPSASLSSSAFQREAQKLSLQSKSSYLQHLLMPQKLDKVSEEASKSGCLKTAEFPYLDGKSYPNTVSVPANSSEPQHSDKRTSVAPAVGWPPIRSFRKNLAAPRSSKPNSLGLSKETVQEDNGSKSDCCNGQMFVKVCMDGVPIGRKLNLQAYDSYEKLSAGIDELFHYLLAAQRNYLVAEDGRKMEETTSFSDSKHENRLYTLVYYDNEGDRMLVGDVPWNMFVSTVKRLHVLKSSAMATTEMK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5111868 5115153 - MC11g0638 Mch11g0759 679693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0759 368 MobiDBLite consensus disorder prediction 188 208 - -
Mch11g0759 368 MobiDBLite consensus disorder prediction 222 248 - -
Mch11g0759 368 MobiDBLite consensus disorder prediction 225 248 - -
Mch11g0759 368 Pfam AUX/IAA family 34 362 IPR033389 -
Mch11g0759 368 Gene3D - 250 368 - -
Mch11g0759 368 MobiDBLite consensus disorder prediction 188 203 - -
Mch11g0759 368 SUPERFAMILY CAD & PB1 domains 245 356 - -
Mch11g0759 368 ProSiteProfiles PB1 domain profile. 255 359 IPR053793 -
Mch11g0759 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 361 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0759 K14484 - - csv:101219386 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0759 Mch-Chr11:5111868 Mch1g1348 Mch-Chr1:15495954 8.30E-26 dispersed
Mch11g0759 Mch-Chr11:5111868 Mch8g1215 Mch-Chr8:8703603 9.08E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014199 0 1 0 0 0 0 2 0 0 1 0 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 1 3 4 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42592 PF02309 AUX_IAA 2.90E-57 CL0072 Mch TR