Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0766 | ATGGAAGGTCCCGAATATTTCCAGCCCGGCTTTTGCTCACAATTCGCGACGGAAAAGCGCCAGCCCTCCGATAACAATAACACCAACAATAACGCCAATAATAATAAGACTGCCGCTGCCGCCGACCATTTCATCGTCGAAGACCTCCTCGACTTCTCCAATGACGACGACGTTTTCTTCACCGACAACCACACCACCCCAAGCTCCACCGATTCTTCCACTCTCACCTTACTCGATTCCGCCAATTCTTCCTCCTTCAACGCCAATTTCCAACCCAATTTGCCTTACCATTCTTTCGCCGACGCCAATTTCTCCAGCGACCTCTGCGTCCCGTACGACGACATAGCCGAGCTCGAATGGCTTTCCAATTTCGTGGAAGAGTCCTTCTCCACCGATGACTTGGAGAAGCTGAGTCTGATAACGGGCATGAATTCCCGGGCTGACGATGAAGGCTCCAAAACCCGAGAATTCCAACCCGGAATGATGACCCGAAACAACTCCTCTTTCCGCCCCGAAATGTCGGTCCCGGCCAAAGCTGCACGTAGCAAGCGCTCTCGGGCGGCGCCTTGCATATGGAATTCCCGATTATCCGTGCTCTCCCCGACAAATTCCTCGTCGGAAACCGACGTTCTCGTCACGGCACATCCCAACACGGGCAAGAAAACCGTGAAATCCGCGGCGAAGAAGAAAGAAGCCCCGGACGACACGTCGTCGGGGAATGGGGAGGGGCGTAAGTGCCTCCATTGCGCGACCGACAAAACGCCGCAGTGGCGGACGGGGCCAATGGGGCCCAAGACGCTGTGCAACGCTTGCGGGGTCCGGTACAAGTCCGGCCGCCTCGTCCCGGAATACCGGCCGGCGTCGAGCCCCACCTTCGTGCTGACCAAGCACTCAAACTCGCACCGGAAGGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGGGCGCAACCGCAGCCGCAACCGCAACAGTATCTTCATCACGAGAATATGGCGTTCGATGTATCCAACGACGACGATTATTTGATCCACCAACACATAGCCCCCGCCTTCGAATAG | 1059 | 56.28 | MEGPEYFQPGFCSQFATEKRQPSDNNNTNNNANNNKTAAAADHFIVEDLLDFSNDDDVFFTDNHTTPSSTDSSTLTLLDSANSSSFNANFQPNLPYHSFADANFSSDLCVPYDDIAELEWLSNFVEESFSTDDLEKLSLITGMNSRADDEGSKTREFQPGMMTRNNSSFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVLVTAHPNTGKKTVKSAAKKKEAPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKEMMRAQPQPQPQQYLHHENMAFDVSNDDDYLIHQHIAPAFE | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5175344 | 5177524 | + | MC11g0645 | Mch11g0766 | 679700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0766 | 352 | MobiDBLite | consensus disorder prediction | 145 | 172 | - | - | |
Mch11g0766 | 352 | PIRSF | Txn_fac_GATA_plant | 20 | 336 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Mch11g0766 | 352 | Pfam | GATA zinc finger | 246 | 280 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch11g0766 | 352 | Gene3D | - | 239 | 291 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Mch11g0766 | 352 | MobiDBLite | consensus disorder prediction | 224 | 238 | - | - | |
Mch11g0766 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 240 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch11g0766 | 352 | FunFam | GATA transcription factor | 236 | 321 | - | - | |
Mch11g0766 | 352 | CDD | ZnF_GATA | 245 | 292 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch11g0766 | 352 | SMART | GATA_3 | 240 | 290 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch11g0766 | 352 | MobiDBLite | consensus disorder prediction | 216 | 244 | - | - | |
Mch11g0766 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 246 | 271 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch11g0766 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 241 | 304 | - | - | |
Mch11g0766 | 352 | MobiDBLite | consensus disorder prediction | 158 | 172 | - | - | |
Mch11g0766 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 312 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0766 | Mch-Chr11:5175344 | Mch9g0313 | Mch-Chr9:2348359 | 4.69E-76 | dispersed | |
Mch7g0890 | Mch-Chr7:13461372 | Mch11g0766 | Mch-Chr11:5175344 | 3.25E-38 | transposed | |
Mch11g0766 | Mch-Chr11:5175344 | Mch8g0323 | Mch-Chr8:2267097 | 3.93E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42594 | PF00320 | GATA | 3.20E-15 | CL0167 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0766 | - | - | - | 0.0 |