Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0766 ATGGAAGGTCCCGAATATTTCCAGCCCGGCTTTTGCTCACAATTCGCGACGGAAAAGCGCCAGCCCTCCGATAACAATAACACCAACAATAACGCCAATAATAATAAGACTGCCGCTGCCGCCGACCATTTCATCGTCGAAGACCTCCTCGACTTCTCCAATGACGACGACGTTTTCTTCACCGACAACCACACCACCCCAAGCTCCACCGATTCTTCCACTCTCACCTTACTCGATTCCGCCAATTCTTCCTCCTTCAACGCCAATTTCCAACCCAATTTGCCTTACCATTCTTTCGCCGACGCCAATTTCTCCAGCGACCTCTGCGTCCCGTACGACGACATAGCCGAGCTCGAATGGCTTTCCAATTTCGTGGAAGAGTCCTTCTCCACCGATGACTTGGAGAAGCTGAGTCTGATAACGGGCATGAATTCCCGGGCTGACGATGAAGGCTCCAAAACCCGAGAATTCCAACCCGGAATGATGACCCGAAACAACTCCTCTTTCCGCCCCGAAATGTCGGTCCCGGCCAAAGCTGCACGTAGCAAGCGCTCTCGGGCGGCGCCTTGCATATGGAATTCCCGATTATCCGTGCTCTCCCCGACAAATTCCTCGTCGGAAACCGACGTTCTCGTCACGGCACATCCCAACACGGGCAAGAAAACCGTGAAATCCGCGGCGAAGAAGAAAGAAGCCCCGGACGACACGTCGTCGGGGAATGGGGAGGGGCGTAAGTGCCTCCATTGCGCGACCGACAAAACGCCGCAGTGGCGGACGGGGCCAATGGGGCCCAAGACGCTGTGCAACGCTTGCGGGGTCCGGTACAAGTCCGGCCGCCTCGTCCCGGAATACCGGCCGGCGTCGAGCCCCACCTTCGTGCTGACCAAGCACTCAAACTCGCACCGGAAGGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGGGCGCAACCGCAGCCGCAACCGCAACAGTATCTTCATCACGAGAATATGGCGTTCGATGTATCCAACGACGACGATTATTTGATCCACCAACACATAGCCCCCGCCTTCGAATAG 1059 56.28 MEGPEYFQPGFCSQFATEKRQPSDNNNTNNNANNNKTAAAADHFIVEDLLDFSNDDDVFFTDNHTTPSSTDSSTLTLLDSANSSSFNANFQPNLPYHSFADANFSSDLCVPYDDIAELEWLSNFVEESFSTDDLEKLSLITGMNSRADDEGSKTREFQPGMMTRNNSSFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVLVTAHPNTGKKTVKSAAKKKEAPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKEMMRAQPQPQPQQYLHHENMAFDVSNDDDYLIHQHIAPAFE 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5175344 5177524 + MC11g0645 Mch11g0766 679700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0766 352 MobiDBLite consensus disorder prediction 145 172 - -
Mch11g0766 352 PIRSF Txn_fac_GATA_plant 20 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch11g0766 352 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 Gene3D - 239 291 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch11g0766 352 MobiDBLite consensus disorder prediction 224 238 - -
Mch11g0766 352 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 FunFam GATA transcription factor 236 321 - -
Mch11g0766 352 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 MobiDBLite consensus disorder prediction 216 244 - -
Mch11g0766 352 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Mch11g0766 352 MobiDBLite consensus disorder prediction 158 172 - -
Mch11g0766 352 PANTHER GATA TRANSCRIPTION FACTOR 43 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0766 Mch-Chr11:5175344 Mch9g0313 Mch-Chr9:2348359 4.69E-76 dispersed
Mch7g0890 Mch-Chr7:13461372 Mch11g0766 Mch-Chr11:5175344 3.25E-38 transposed
Mch11g0766 Mch-Chr11:5175344 Mch8g0323 Mch-Chr8:2267097 3.93E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42594 PF00320 GATA 3.20E-15 CL0167 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0766 - - - 0.0