Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0766 ATGGAAGGTCCCGAATATTTCCAGCCCGGCTTTTGCTCACAATTCGCGACGGAAAAGCGCCAGCCCTCCGATAACAATAACACCAACAATAACGCCAATAATAATAAGACTGCCGCTGCCGCCGACCATTTCATCGTCGAAGACCTCCTCGACTTCTCCAATGACGACGACGTTTTCTTCACCGACAACCACACCACCCCAAGCTCCACCGATTCTTCCACTCTCACCTTACTCGATTCCGCCAATTCTTCCTCCTTCAACGCCAATTTCCAACCCAATTTGCCTTACCATTCTTTCGCCGACGCCAATTTCTCCAGCGACCTCTGCGTCCCGTACGACGACATAGCCGAGCTCGAATGGCTTTCCAATTTCGTGGAAGAGTCCTTCTCCACCGATGACTTGGAGAAGCTGAGTCTGATAACGGGCATGAATTCCCGGGCTGACGATGAAGGCTCCAAAACCCGAGAATTCCAACCCGGAATGATGACCCGAAACAACTCCTCTTTCCGCCCCGAAATGTCGGTCCCGGCCAAAGCTGCACGTAGCAAGCGCTCTCGGGCGGCGCCTTGCATATGGAATTCCCGATTATCCGTGCTCTCCCCGACAAATTCCTCGTCGGAAACCGACGTTCTCGTCACGGCACATCCCAACACGGGCAAGAAAACCGTGAAATCCGCGGCGAAGAAGAAAGAAGCCCCGGACGACACGTCGTCGGGGAATGGGGAGGGGCGTAAGTGCCTCCATTGCGCGACCGACAAAACGCCGCAGTGGCGGACGGGGCCAATGGGGCCCAAGACGCTGTGCAACGCTTGCGGGGTCCGGTACAAGTCCGGCCGCCTCGTCCCGGAATACCGGCCGGCGTCGAGCCCCACCTTCGTGCTGACCAAGCACTCAAACTCGCACCGGAAGGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGGGCGCAACCGCAGCCGCAACCGCAACAGTATCTTCATCACGAGAATATGGCGTTCGATGTATCCAACGACGACGATTATTTGATCCACCAACACATAGCCCCCGCCTTCGAATAG 1059 56.28 MEGPEYFQPGFCSQFATEKRQPSDNNNTNNNANNNKTAAAADHFIVEDLLDFSNDDDVFFTDNHTTPSSTDSSTLTLLDSANSSSFNANFQPNLPYHSFADANFSSDLCVPYDDIAELEWLSNFVEESFSTDDLEKLSLITGMNSRADDEGSKTREFQPGMMTRNNSSFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVLVTAHPNTGKKTVKSAAKKKEAPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKEMMRAQPQPQPQQYLHHENMAFDVSNDDDYLIHQHIAPAFE 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5175344 5177524 + MC11g0645 Mch11g0766 679700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0766 352 MobiDBLite consensus disorder prediction 145 172 - -
Mch11g0766 352 PIRSF Txn_fac_GATA_plant 20 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch11g0766 352 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 Gene3D - 239 291 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch11g0766 352 MobiDBLite consensus disorder prediction 224 238 - -
Mch11g0766 352 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 FunFam GATA transcription factor 236 321 - -
Mch11g0766 352 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 MobiDBLite consensus disorder prediction 216 244 - -
Mch11g0766 352 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0766 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Mch11g0766 352 MobiDBLite consensus disorder prediction 158 172 - -
Mch11g0766 352 PANTHER GATA TRANSCRIPTION FACTOR 43 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0766 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0766 Mch-Chr11:5175344 Mch9g0313 Mch-Chr9:2348359 4.69E-76 dispersed
Mch7g0890 Mch-Chr7:13461372 Mch11g0766 Mch-Chr11:5175344 3.25E-38 transposed
Mch11g0766 Mch-Chr11:5175344 Mch8g0323 Mch-Chr8:2267097 3.93E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42594 PF00320 GATA 3.20E-15 CL0167 Mch TF