Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0770 | CTCTACCGGGGGGTTCGGATGCGCACTTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCCCGCAAGAAATCCCGCATTTGGCTCGGAACCTTCCCGACCCCGGAGATGGCCGCCCGAGCCCACGACGTGGCCGCCTTGTCCATCAAAGGTAACTCAGCCATTCTCAACTTCCCCGAACTCGCCCACTCCTTCCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCCCGCCCACCCACTCCGACGACCTCACCGAGATCGTCAAGCTACCCACTCTCCCGGCCACCAATTACGACTTCATCGCCACCAATAACGAGTTCGTGCTCATGGACTCCACGGACGGATGGGAGGATTATTATTGCGCCTACAATACTTACAACGATTTGGGAATGGGGATTGGAATTGGGGACACTAATTTCTTCTGGGATTAT | 516 | 61.43 | LYRGVRMRTWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSFPRPVSFAPRDVQAAAAKAAHMDPSSSSSSSSSSSSSAAAAPPTHSDDLTEIVKLPTLPATNYDFIATNNEFVLMDSTDGWEDYYCAYNTYNDLGMGIGIGDTNFFWDY | 172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5196917 | 5197432 | - | MC11g0648 | Mch11g0770 | 679704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0770 | 172 | FunFam | Ethylene-responsive transcription factor 2 | 1 | 59 | - | - | |
Mch11g0770 | 172 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
Mch11g0770 | 172 | MobiDBLite | consensus disorder prediction | 79 | 109 | - | - | |
Mch11g0770 | 172 | CDD | AP2 | 2 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | PRINTS | Ethylene responsive element binding protein signature | 24 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | PRINTS | Ethylene responsive element binding protein signature | 2 | 13 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | SMART | rav1_2 | 1 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | Pfam | AP2 domain | 2 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | SUPERFAMILY | DNA-binding domain | 2 | 59 | IPR016177 | GO:0003677(InterPro) | |
Mch11g0770 | 172 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 2 | 136 | IPR051032 | - | |
Mch11g0770 | 172 | Gene3D | AP2/ERF domain | 1 | 59 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0770 | 172 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0770 | Mch-Chr11:5196917 | Mch6g0844 | Mch-Chr6:5837127 | 1.04E-54 | dispersed | |
Mch7g0365 | Mch-Chr7:5803549 | Mch11g0770 | Mch-Chr11:5196917 | 2.16E-26 | transposed | |
Mch11g0770 | Mch-Chr11:5196917 | Mch8g0335 | Mch-Chr8:2362414 | 3.83E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42595 | PF00847 | AP2 | 9.30E-14 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0770 | K09286 | - | csv:101217333 | 224.172 |