Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0770 CTCTACCGGGGGGTTCGGATGCGCACTTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCCCGCAAGAAATCCCGCATTTGGCTCGGAACCTTCCCGACCCCGGAGATGGCCGCCCGAGCCCACGACGTGGCCGCCTTGTCCATCAAAGGTAACTCAGCCATTCTCAACTTCCCCGAACTCGCCCACTCCTTCCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCCCGCCCACCCACTCCGACGACCTCACCGAGATCGTCAAGCTACCCACTCTCCCGGCCACCAATTACGACTTCATCGCCACCAATAACGAGTTCGTGCTCATGGACTCCACGGACGGATGGGAGGATTATTATTGCGCCTACAATACTTACAACGATTTGGGAATGGGGATTGGAATTGGGGACACTAATTTCTTCTGGGATTAT 516 61.43 LYRGVRMRTWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSFPRPVSFAPRDVQAAAAKAAHMDPSSSSSSSSSSSSSAAAAPPTHSDDLTEIVKLPTLPATNYDFIATNNEFVLMDSTDGWEDYYCAYNTYNDLGMGIGIGDTNFFWDY 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5196917 5197432 - MC11g0648 Mch11g0770 679704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0770 172 FunFam Ethylene-responsive transcription factor 2 1 59 - -
Mch11g0770 172 MobiDBLite consensus disorder prediction 85 106 - -
Mch11g0770 172 MobiDBLite consensus disorder prediction 79 109 - -
Mch11g0770 172 CDD AP2 2 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 SMART rav1_2 1 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 Pfam AP2 domain 2 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 SUPERFAMILY DNA-binding domain 2 59 IPR016177 GO:0003677(InterPro)
Mch11g0770 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 136 IPR051032 -
Mch11g0770 172 Gene3D AP2/ERF domain 1 59 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0770 172 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0770 Mch-Chr11:5196917 Mch6g0844 Mch-Chr6:5837127 1.04E-54 dispersed
Mch7g0365 Mch-Chr7:5803549 Mch11g0770 Mch-Chr11:5196917 2.16E-26 transposed
Mch11g0770 Mch-Chr11:5196917 Mch8g0335 Mch-Chr8:2362414 3.83E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42595 PF00847 AP2 9.30E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0770 K09286 - csv:101217333 224.172