Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0772 AGCCCACATAACCGTAAACTGATGAGCCCTGAATCGCCGTGGACTCTGTCTCCTCTGCGTACGCCTTCGCCTTCTCTGGTTTACCACTGCATAGCATCGCTCCATCGCGGCGAAGGGAATATCTACTCCATTGCTATTTCTAAGGGCGTCGTGTTTACTGGCTCCGACAGCACTCGTATTCGTGCATGGAAGCAGCCTGACTGCATGGACCGTGGCTACCTCAAGGCCGCCGCCGGCGGAGTTAAGGCCATTTCTGCCTCCGGAAACATGTTGTTGACATCACACAAAGATCTGAGAATCCGAGTATGGAATTTCACAGTTTCGGAGAAGTTGAGGTTCAAAAAGGTGTGTTCCCTCCCAAAAAGAAGCTCGTTCCTGTTGTTGCCTCGAACCGAAACCACACAGCTTCACAAAGACACCATCTCCTGCATGGGTTACTACAACGCCGATGGCCTCCTCTACACTGCCTCCCACGACAGAACCGTGAAGGCCTGGCGACTCTCCGACCGCAAATGCGTCAACTCCTTCCTCGCCCACGACGACCACGTCAACTCCCTAACGCTCAACCAAGCTGATGGCTGCCTCTTCACCGCCTCCTCCGATGCCACTGTCAAAATCTGGCGGAGGCTCTACCGGGACAACTCCCACACCCTCACCATGACGCTCAAGTTCCAAACCTCCCCAGTAAACACTGTCGTTTTGGATGCCAACGCCGCGCTTCTTTACTCCGGCTGCTCCGACGGGACTGTGAATTTCTGGGAGAAGGAGAAGCAGTCGTATAGATATAAGCACATGGGGTTGTTGCAGGGGCATCGGTTCGCGGTTCTGTGTCTTGCGGTGGCGGAGAAGCTTAAGCTGGTGTTGAGCGGGTCGGAGGACACGACAGTGAGGATATGGAGGAAGCAGGAGGGGGGCTATTGCCATGAATGCGTGGTGGTGCTGGAGGGCCATAGAGGGCCGGTGAGGTGCCTGGCGGCGACCGTGGAAATGGAAAACATTGTGTCCAGTTTTTTGGTTTACAGTGGGAGTTTGGACCAGACGTTTAAGGTGTGGAGAGTGAAGGTA 1065 54.74 SPHNRKLMSPESPWTLSPLRTPSPSLVYHCIASLHRGEGNIYSIAISKGVVFTGSDSTRIRAWKQPDCMDRGYLKAAAGGVKAISASGNMLLTSHKDLRIRVWNFTVSEKLRFKKVCSLPKRSSFLLLPRTETTQLHKDTISCMGYYNADGLLYTASHDRTVKAWRLSDRKCVNSFLAHDDHVNSLTLNQADGCLFTASSDATVKIWRRLYRDNSHTLTMTLKFQTSPVNTVVLDANAALLYSGCSDGTVNFWEKEKQSYRYKHMGLLQGHRFAVLCLAVAEKLKLVLSGSEDTTVRIWRKQEGGYCHECVVVLEGHRGPVRCLAATVEMENIVSSFLVYSGSLDQTFKVWRVKV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5211388 5213034 + MC11g0650 Mch11g0772 679706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 207 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 CDD WD40 35 352 - -
Mch11g0772 355 Gene3D - 14 210 IPR015943 GO:0005515(InterPro)
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 299 - -
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 207 - -
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 299 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 355 - -
Mch11g0772 355 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 354 IPR045182 -
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 215 254 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 261 300 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 27 64 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 128 166 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 67 104 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 169 208 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SMART WD40_4 307 352 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 SUPERFAMILY WD40 repeat-like 29 351 IPR036322 GO:0005515(InterPro)
Mch11g0772 355 Pfam WD domain, G-beta repeat 135 165 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 Pfam WD domain, G-beta repeat 171 207 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 Pfam WD domain, G-beta repeat 309 351 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 254 IPR001680 GO:0005515(InterPro)
Mch11g0772 355 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Mch11g0772 355 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Mch11g0772 355 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Mch11g0772 355 Gene3D - 211 355 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0772 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0772 Mch-Chr11:5211388 Mch8g1187 Mch-Chr8:8427864 2.07E-59 dispersed
Mch11g0772 Mch-Chr11:5211388 Mch11g0221 Mch-Chr11:1402760 6.92E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41