Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0789 ATGGAGAAGACGGCCGATTTCTCTCGTTGTGGGTTTATGAGGAGGATTTTCCAGCGACGGTGCAAGTGGCTGAGAAAATCCTCTGTACATTCATTACCCACAAACAACACCGATAATGGAAACTTAAAATTACCCACCACTGAAAATCCCAAAAGGCAGAGCCGGCGCTCTGTTTCCGAAGTGTGTATCGAAAATCCGGCCGCTGCAGCCAAAGCTCCGGCGGACCCAGATCCAAAAACACCCAAAAAGCCAACTTTGGACCAACCAAGGCCTTCAATTTCTCAACAGAAGTGTCAAATCCAAAGCAGAAGGCCTTCCGATGCTGCGAGAAGCTCCACATCGTCCTCCAATGGCTCTGCACAAGCAAGAGCCATGAATTCGCAGCAACAATTCAACGAACCCAAAGCTCCCATTCGAAAGTCTTTAAGCAATGGGGCGATTTTGGGTAACTTGAAGCAAGCTGGAAGTGGGAATTTGTCGGCCAACAACAGTCCACGGCTTGAAAGTTCTAATTTGGGTTTCCTCTCTAAGAATCTAAAAGACATGAATTCAAGTCCAAAACTTGGAGGAAGTGGAACTATGGGGAACATCATGAGGAGGAATTCTTCAGAGTTTCGACAGATTCGAGGTAGATTAGAGCCGGATGTTTTGAAGTCCATGGGAAATGAAGCATACAAAAAAGGGAAATATGAAGAGGCCTTGGATTTATACGACAGAGCAATAGGCTTAGATTCAGGGAATGCTGTTTACCACAGTAACAAAGCCGCTGCTTTAATTGGCTTAGACCGTCTAATGGAAGCCATTGAAGAATGCAAAAAGGCATTGGAAATTCAACCTTCTTATCAAAGAGCTCACCATCGTTTAGCCACTACCTATCTCAGAATTGGGGAGCCCGAGAAAGCTTTGGACCATTTGGAACAATCCGGGCCTTACAGTGACTCAAACCAAATTCATAAAGCTCGTGCTCTTCAGAGTTGCCTGAGTAGGTGCTTTGAAGCAAGAAAGTTGCATGAATGGAACACTCTGTTAAAGGAGTCACAATATGCAATTTCCTCTGTTGCCAATTCAGCTTATAAACTCTATGCCCTGCAAGCCGAGGCCCTACTGAAGTTCCATAGACATCAAGAGGCTTATGCCATTTACCAAAAGGGTCGAAGCCTCAAAACCAACTCTCTAACCAAGTCGTTTAGTTTAGCTGATAGTGCCCTTATTTTATCCATCGAGGCACAAGTTTACATGACCATGGGAAGGTTTGAGGAAGCTGTGGCGGCAGCAGACCAATCAACACAACTTGATCCAAGAAACAAGGAGGCAAGTAGAGTGGCTAAATGGGCCAGAGTAGTTTCATTGGCTCGATTGAGAGGCAATTTTCTTTTCAAGGAGTCAAGATTCTCCGAGGCCTGCATTGCCTATAGCGAAGGCCTAGAAAACGACCCGTATAACTCGATTTTGTTATGCAACCGAGCGGCTTGCCGATGGAAGCTGGGGCAGTATGAGAAAGCTGTTGAAGATTGCTCTGCTGCTCTTCAGGCACAGCCTCGTTACAGCAAAGCCAGACTGCGGAGGGCTGATTGCAATGCCAAAATGGAAAGATGGGAGGCTTCGATTCAAGATTATGAGGTGTTGATAAGGGAGAGTCCAGGAAATGAGGAAGTGGGGAGGGCCCTGTTTGAGGCGCAGGTGCAACTCAGAAAGCAGCGTGGGGAAGATGTTAAGGACTTGAAATTTGGGTCCAATTTGGTGTCCATTTCTAGCTATGAACGTTTTAGGCACTTTGTTACTTCTCCTGGGATGTCAGTGGTTCTGTTCTGCAACAAAAGCAGCCATAAACAGGGGTTAGAATTAGAAGTGTTCGAGCAAGTTTACAAGCGGTTTCCATCGGTGAATTTTCTCAAGGTGGAGATAGAAGACCATCCATATTTGGCGAAGTTGGAGAATGTGAGCTCCATTCCAGGTTTTAAAATATACAGAAATGGGACAGTAGTGAAGGAAATCCCAGGCTCCAAACCCCATTCATTAGAAAGTTTAGTGAAGTTGTACAGCAGTTGA 2049 45.53 MEKTADFSRCGFMRRIFQRRCKWLRKSSVHSLPTNNTDNGNLKLPTTENPKRQSRRSVSEVCIENPAAAAKAPADPDPKTPKKPTLDQPRPSISQQKCQIQSRRPSDAARSSTSSSNGSAQARAMNSQQQFNEPKAPIRKSLSNGAILGNLKQAGSGNLSANNSPRLESSNLGFLSKNLKDMNSSPKLGGSGTMGNIMRRNSSEFRQIRGRLEPDVLKSMGNEAYKKGKYEEALDLYDRAIGLDSGNAVYHSNKAAALIGLDRLMEAIEECKKALEIQPSYQRAHHRLATTYLRIGEPEKALDHLEQSGPYSDSNQIHKARALQSCLSRCFEARKLHEWNTLLKESQYAISSVANSAYKLYALQAEALLKFHRHQEAYAIYQKGRSLKTNSLTKSFSLADSALILSIEAQVYMTMGRFEEAVAAADQSTQLDPRNKEASRVAKWARVVSLARLRGNFLFKESRFSEACIAYSEGLENDPYNSILLCNRAACRWKLGQYEKAVEDCSAALQAQPRYSKARLRRADCNAKMERWEASIQDYEVLIRESPGNEEVGRALFEAQVQLRKQRGEDVKDLKFGSNLVSISSYERFRHFVTSPGMSVVLFCNKSSHKQGLELEVFEQVYKRFPSVNFLKVEIEDHPYLAKLENVSSIPGFKIYRNGTVVKEIPGSKPHSLESLVKLYSS 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5317706 5321421 + MC11g0665 Mch11g0789 679723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0789 682 MobiDBLite consensus disorder prediction 87 135 - -
Mch11g0789 682 Gene3D Glutaredoxin 573 681 - -
Mch11g0789 682 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 MobiDBLite consensus disorder prediction 30 48 - -
Mch11g0789 682 SUPERFAMILY TPR-like 214 438 IPR011990 GO:0005515(InterPro)
Mch11g0789 682 Pfam Tetratricopeptide repeat 215 246 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 Pfam Tetratricopeptide repeat 484 515 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 Pfam Tetratricopeptide repeat 409 435 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 MobiDBLite consensus disorder prediction 30 135 - -
Mch11g0789 682 SMART tpr_5 282 315 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 482 515 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 402 435 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 248 281 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 516 549 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 358 391 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 448 481 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SMART tpr_5 214 247 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 Gene3D Tetratricopeptide repeat domain 213 568 IPR011990 GO:0005515(InterPro)
Mch11g0789 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 673 IPR044534 GO:0005737(PANTHER)
Mch11g0789 682 Pfam Thioredoxin 618 677 IPR013766 -
Mch11g0789 682 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515(InterPro)
Mch11g0789 682 SUPERFAMILY Thioredoxin-like 571 673 IPR036249 -
Mch11g0789 682 CDD TRX_family 587 678 - -
Mch11g0789 682 Pfam Tetratricopeptide repeat 265 322 - -
Mch11g0789 682 SUPERFAMILY TPR-like 452 565 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0789 K09527 - - csv:101206173 1006.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0696 Mch-Chr10:4794769 Mch11g0789 Mch-Chr11:5317706 2.44E-111 dispersed
Mch11g0789 Mch-Chr11:5317706 Mch11g1016 Mch-Chr11:7040334 1.29E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39