Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0793 ATGGGTTCTCGAGGAAGACTATTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGTGATGGTATTATGTTTCAGCTTCAGCAGGCTCAACCGTCTTCAAATTCCCATGCTTCAGACTTATTTCCAACATCAGGAGGTCCCCAAAGAATATTAAACAACCATGCATTTTCTCATGCATCTTCTGTATCAGGTTTTCAGCCTTTTATTCGGAGTAAACTTGGTTCTCATCCTGAAATGGGTGAAGAACAAAAGAAAATATCAGATCAAAATACAAAGACTGCACCATCATCTAAGTTAAGTAATGACGAGACTGCTGCACCAACATTGGTTTCAGGTTCTAAAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCTGAGGGTTCTGCTGATATAAATGGAGGCAGCGTTTTGCATAAACAGTTAAAAGCTTCACAAGAGCAAGGCCTACTTTCTACTTCCTGTGATGTTTCCGAGAACAATTCTTGCTATACAAAAATTGCTGATAGTACTGTTGATAAAAGTAGTAATTATGTTCCTTCAACATTGGATCTGGAGCCAACTGATCGGAAAAGTAACAGTACCCTTAATACAGAAAGCAATGTTAAAGTTGATACATCCATGGATGGTGGTCAGGAAGAGACTGGGTTGCCCCCAAAACAAAGAGAAGTCAAGGGCATCGAAGCAAGTCATGCTCTAAAATGTGCTAATAACCCTGGAAAGAGGAAAATAGATCAACATCTAGAAGCCAAGCTTGGAAAGAAGCGTAATAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGTCCTATGAAAACGTCAACCCCTCGAAGGCAAACATTTCCACCTCCTATAACCACTCGCATTGTGAAGGAAGTTCATAATGCAACCCAAGTTACTGAACGTGTGGGGGAAAAACAGACTGTTAACAAAGACCAGAAACAAGGAGATGTTTCATGTCATGAAGGAGGCATTTCAGCAGAATCTGGTGAATCAAAATTGGAATGTAATGGTGAGACGAGTTCTGGATTACTAACTCGGCCAAACAGGCCAAACAATGATGGAGATCTCCCAACAGAGGCAGCCTTACCACCAATTCCTAGACAGGGTTCATGGAAGATACCTACAGATTCAAGGTTGCAGAGGAATATGCAGGTCTCCAATAGGAAATCACCTCTAGCTAATCAAAGTTCTTCTGACCACAAGCAGGTAAGCAAGAAGCATATTCCTGCCAAGAAGCAAAATTCTGTTAGTACTCATCAAGACTCATCAGTTGAACGACTGATACGGGAGGTGACGAATGATAAGTTTTGGCATCACCCAGAGGAAACTGAACTCCAATGTGTTCCTGGTCGGTTTGAATCTGTGGAAGAATACATCAGAGTGTTCGAACCTTTGTTATTTGAGGAATGTCGGGCTCAACTTTACAGTACGTGGGAGGAACTCTCCGAAACATTCTCAAGAGATACACATGTGATGGTTCGTGTCAAGAATATTGACAGGAGAGAAAGAGGATGGTATGATGTAGTAGTTCTTCCTGTGAACGAGTGCAAATGGTCATTCAAGGAGGGGGATGTGGCAGTTCTTTCCTGCCCCAGACCTGGATCAGTGCGATCAAAGAGGAACAACACCATGTCTGTAGAGGATGATGAAGATCCTGAATCTGGTGGACGTGTGGCTGGAACTGTTCGACGGCACATTCCTATTGACACCCGTGACCCTCCAGGGGCTATCATTCATTTTTATGTTGGGGACTCGTATGATTCCAGTAGGACTGAAGAAGATCACATACTTAGAAAACTTCAGACAAAGAATGTTTGGTTTTTAACAGTGCTTGGTTCTCTTGCAACCACCCAGCGAGAGTATGTTGCCCTGCATGCATTTCGTCGGCTCAATATGCAGATGCAATCTTCAATCCTTCAGCCTAATCCTGAGCAATTTCCAAAGTACGAGCAACAGTCGCCTGCTATGCCTGAGTGTTTCACACAAAATTTTGTTGAGTATCTGCATAGAACCTTCAACGGACCCCAGCTATCTGCAATCCAGTGGGCAGCAACACATACAGCTGCTGGTACGAGCAGCGGGACAGCCAAGAGGCAAGAACCATGGCCTTTTACGCTCGTACAAGGTCCTCCTGGGACAGGTAAGACACATACAGTTTGGGGAATGCTAAATGTTATCCATTTGGTTCAGTATCAGCATTACTATACTTCTCTGCTCAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAAAGCAGCTCAGATAATATCATTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAGAATCTTTACCGCACTCTTCCCACGTTGTGTCCTAAACCTAGAATGCTAGTTTGTGCACCTTCTAATGCTGCAACAGATGAGCTTCTTGCTCGTGTTCTTGATCGTGGATTTATTGATGGGGAAATGAAGGTTTATCGACCTGATGTGGCTCGAGTTGGTGTAGATTCACAAACTCGTGCGGCCCAAGCAGTTTCTGTTGAGCGTAGAACAGAACAACTTTTGGTCAAAAGTCGAGATGAAGTCTTAAGATGGATGCACCAGCTAAAAGTTCGTGAAACTCAATATTCTCAGCAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCTGCTGCTGTTCGTTCTCAAGGATCCGTTGGTGTTGACCCTGATGTTCTGGTGGCTCGTGACCAAAATCGAGATGCATTATTGCAACATCTTGCTGCTGTAATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGCCTCCTTATTTTAGAAGGCAGGTATCGATCTAACAGTAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAATGAGGCTGAGATAGTTTTCACTACAGTATCAAGCAGTGGTCGAAAATTGTTTTCTCGACTTTCTCATGGTTTTGACATGGTAGTCATTGATGAGGCAGCCCAAGCCAGTGAAGTAGCTGTTCTTCCACCGCTTTCTCTTGGTGCAGCAAGGTGTGTGCTTGTTGGGGATCCCCAACAGCTCCCTGCCACGGTTATCAGTAAAGCAGCAGGAACATTATTGTACAGTAGAAGTCTCTTCGAAAGATTCCAGCTAGCAGGATGTCCCACTATGTTGTTATCTGTGCAGTACAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGGCGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCTGATGAGACATATTACAAAGACCCTTTACTTAGACCATACACTTTCTTTGATATTACACATGGACGGGAATCTCATAGAGGGGGCTCTGTTTCCTATCAAAATATTCATGAAGCACAATTTTGTCTTCGTTTGTATGAATATCTACAGAAAACTGTGAAGTCATTAGGCGTAGGTAAAGTTTCAATTGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGCGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGAAAGGATCTATATATTAATACTGTAGATGCTTTTCAAGGTCAAGAGAGGGATGTGATTATCATGTCTTGTGTGCGTGCCTCCAACCATGGTGTTGGATTTGTTGCAGATATCCGTCGAATGAATGTAGCACTGACCCGTGCAAGGAGGGCTCTCTGGGTCATGGGCAATGCTAATGCTTTGATGCAGTCTGATGATTGGGCTGCGTTAATCACTGATGCAAGGGCAAGGAGCTGTTACATGGACATGGAATCGCTTCCCAAGGACTTTCTCGGACAGAAGGGATCTATTCAATCTGCTTTGCCAGGGAAGATCTCTTCCAATATTAGGGGTGTGAGATCAGCTCTTCCAAGACATAGGACTCTGGATATGCATGTGGAGTCGAGGTCTGGAACACCATCAGAAGATGATGAGAAATCAAACTCTTCGATTATCACCAGGAACGGAAATTACCGGCCTTCTAAGGCTGCTGTAGAGAATTCATCAGATGACTTCGATCAGTCAGGTGACAAATTGAGAGATACTTGGCAATATGGTATACCGAAAAGGCAGAGTTCTGCTGGGATTGTTGGGAAGAGAGAAACTTAA 4125 43.27 MGSRGRLLFDLNEPPVEDNEDSDGIMFQLQQAQPSSNSHASDLFPTSGGPQRILNNHAFSHASSVSGFQPFIRSKLGSHPEMGEEQKKISDQNTKTAPSSKLSNDETAAPTLVSGSKDTQSVEREEGEWSDAEGSADINGGSVLHKQLKASQEQGLLSTSCDVSENNSCYTKIADSTVDKSSNYVPSTLDLEPTDRKSNSTLNTESNVKVDTSMDGGQEETGLPPKQREVKGIEASHALKCANNPGKRKIDQHLEAKLGKKRNRQTMFLNLEDVKMAGPMKTSTPRRQTFPPPITTRIVKEVHNATQVTERVGEKQTVNKDQKQGDVSCHEGGISAESGESKLECNGETSSGLLTRPNRPNNDGDLPTEAALPPIPRQGSWKIPTDSRLQRNMQVSNRKSPLANQSSSDHKQVSKKHIPAKKQNSVSTHQDSSVERLIREVTNDKFWHHPEETELQCVPGRFESVEEYIRVFEPLLFEECRAQLYSTWEELSETFSRDTHVMVRVKNIDRRERGWYDVVVLPVNECKWSFKEGDVAVLSCPRPGSVRSKRNNTMSVEDDEDPESGGRVAGTVRRHIPIDTRDPPGAIIHFYVGDSYDSSRTEEDHILRKLQTKNVWFLTVLGSLATTQREYVALHAFRRLNMQMQSSILQPNPEQFPKYEQQSPAMPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTAKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDNIITGSIDEVLQNMDQNLYRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEVLRWMHQLKVRETQYSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQHLAAVIEGRDKILVEMSRLLILEGRYRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDETYYKDPLLRPYTFFDITHGRESHRGGSVSYQNIHEAQFCLRLYEYLQKTVKSLGVGKVSIGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALITDARARSCYMDMESLPKDFLGQKGSIQSALPGKISSNIRGVRSALPRHRTLDMHVESRSGTPSEDDEKSNSSIITRNGNYRPSKAAVENSSDDFDQSGDKLRDTWQYGIPKRQSSAGIVGKRET 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5339424 5348465 - MC11g0669 Mch11g0793 679727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0793 1374 MobiDBLite consensus disorder prediction 1 58 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 24 58 - -
Mch11g0793 1374 FunFam P-loop containing nucleoside triphosphate hydrolase 1063 1269 - -
Mch11g0793 1374 PANTHER DNA2/NAM7 HELICASE FAMILY 386 1356 IPR045055 -
Mch11g0793 1374 CDD SF1_C_Upf1 1065 1254 IPR047187 -
Mch11g0793 1374 Coils Coil 867 887 - -
Mch11g0793 1374 CDD DEXXQc_SETX 682 1064 - -
Mch11g0793 1374 Pfam AAA domain 686 1034 IPR041677 GO:0004386(InterPro)
Mch11g0793 1374 MobiDBLite consensus disorder prediction 342 362 - -
Mch11g0793 1374 Pfam AAA domain 1041 1237 IPR041679 -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 180 225 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 547 568 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 72 139 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 1301 1321 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 383 409 - -
Mch11g0793 1374 Gene3D - 1063 1268 IPR027417 -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 552 568 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 1322 1342 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 309 433 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 92 118 - -
Mch11g0793 1374 Gene3D - 600 1062 IPR027417 -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 180 214 - -
Mch11g0793 1374 MobiDBLite consensus disorder prediction 1301 1374 - -
Mch11g0793 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 1266 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0793 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0793 Mch-Chr11:5339424 Mch9g0140 Mch-Chr9:1075568 1.08E-96 dispersed
Mch11g0793 Mch-Chr11:5339424 Mch10g1617 Mch-Chr10:16292167 4.12E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37