Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0805 ATGGCCACTTCAGTGCGTAACCGTCAGTTTCCTCATTTGGAACCCTCCTTCAATGGCGGCGTTCGTAACTGTAACTTTCCGAGCTCCATTTCAGAATTCGTTAATCCGAAGAAGCCGGTAACAATGGCGGACGACGACGATTTCTCCAGCGACGAGGATAACGAGTCTGATTTCAGTGATTTGATTCGAAAAGGCATGAGCGAATTGGAGCCGTCGATTTTGGACGCTAGAGATTTGGGGACGGTGGATGCCTGGATCCAGCGAAATGCTTCCATGATCCGTCTCACGGGGAAGCATCCTTTCAATTCGGAGGCTCCGTTGGCGCGTTTGATGCACCACGGCTTCATCACGCCGGTCCCGCTCCATTACGTTCGGAACCACGGTCCGGTGCCCATGGCGAAGTGGGACGACTGGACCGTCGAGGTTTGCGGGCTCGTAAAAAATCCGACCCGGTTCACAATGGACCAACTCGTCCGCGAGTTCCGCACCCGCGAGTTCCCGGCCACGCTCGTCTGCGCCGGCAACCGCCGCAAGGAGCAGAACATGGTGAAGCAAACCATCGGCTTCAACTGGGGCGCCGCCGCGGTCTCCACGTCGGTCTGGCGGGGGGTCCCACTGCGCGACGTTTTGAAGCGCTGCGGCATCTTCAGCAGCAAAAAGGGCGCGCTGAACGTGTGCTTCGAGGGAGCAGAGTCTTTGCCAGGCGGCGGCGGGTCCAAATACGGGACCAGCCTCAGAAAGGAAATAGCCATGGACCCCGCAAGAGACATGATCTTAGCTTACATGCAAAACGGCGAAGTTTTGACGCCCGACCACGGGTTCCCAGTTAGATTAATCGTGCCCGGATTCATCGGTGGCAGAATGGTAAAATGGCTCAAGCGCATTATCGTGACCACACAAGAATCAGATAGCTACTACCATTACAGAGATAACAAGGTCCTCCCTTCCCATGTGGATGCAGAATTGGCAAACTCAGAAGCTTGGTGGTACAAGCCGGAGTATGTTATTGGCGAGTTGAACATAAACTCGGTGATAACGACGCCATGCCACGAGGAAATCTTGCCGATAAATTCATGGACGACGCAGCGGCCGTACACGTTGAGGGGATACGCGTACTCGGGAGGGGGGAAGAAAGTGACACGTGTGGAGGTGACGATGGATGGGGGAGAGTCATGGCACGTGTGCGCGTTGGATCGGCCTGAGAAGGGAAACAAATACGGCAAATATTGGTGTTGGTGCTTCTGGTCACTGGAGGTGGAGGTGCTGCACCTGCTTGGAGCCAAGCAAATTGCAGTCCGCGCCTGGGATGAGACCTTCAACACTCAGCCCGAGAACCTCATATGGAATCTCATGGGAATGATGAACAATTTCTGGTTCCGAGTGAAAACAAACATGTGCAAGCCACACAAAGGAGAGATCGGAATCGTTTTTGAGCACCCAACTTTACCGGCCAACCAAGCCGGCGGCTGGATGGCCAAAGAGAGGCATCTCGAAATTTCAACGGAAACCAACCAAAGCTTGAAGAAAAGCGTCTCCACTCCCTTCATCAACACCGCTTCAAAAACGTACTCAATGTCGGACGTCAAAACGCACAACTCAGACCAATCCGCCTGGATCGTCGTCCACGGCCACGTCTACGACTGCACCCGCTTTCTCAAGGACCACCCCGGCGGCGCCGACAGCATTCTCATCAACGCCGGCACCGACTGCACCGAGGAATTCGACGCCATCCACTCCGACAAAGCCAAGAAAATGCTCGAGGATTATCGGATCGGCGAGTTGATCACCACGGGTTACACCTCGGATTCCTCCTCCTCTAATTCGCCTAACAACTCCGTCCACGGCCCGGCTTCCATTAACAGTCCGTTCCATTTAACTCCAATCACAGAGATTACTCCGCCGACGAGGCGCGTCGCTCTCGTGCCGCGTGAGAAAATCCCGTGCAAACTAATTTCCAAAACCTCAATCTCGCATGACGTTAGACGGTTCAGATTCGCCTTGCCCTCGGCGGATCAAGTCCTCGGATTGCCTGTGGGGAAGCACATATTCCTCTGCGCGCGCGTCGACGGGAAGCTCTGTATGAGGGCTTACACCCCAACGAGCGGCGTCGATGAAGTGAGCCATTTCGATCTAGTGGTCAAGATTTATTTGAAGAACGTGCATCCTAAATTCCCCAACGGTGGGCCCATGTCGCAGCATTTGGAGTCGCTCCCGCTGGGTTCGGAGCTTGAAGTGAAAGGTCCATTGGGTCACATAGAATACGTGGGCCGCGGCAACTTTGTAGTGGACGGCAAGCGCAAGCACGCGAAGAAGCTAGCTATGTTGGCTGGTGGGACGGGGATCACGCCCATTTATCAAGTGGCGCAAGCGATTTTGAAGGATTCGGAGGACGAGACGGAGATGTTTTTGGTGTACGCTAACCGGACGGAGGATGATATTTTGCTGAGGGAGGAGATGGACGAGTGGGTGAAGAGTGATAAGAGGTTTAAAGTGTGGTACGTTGTGAAGGAAAGTGTTAGAGAAGGGTGGGAGTTCAGTGTGGGTGTTGTGACGGAGAGTATCATGAGGGAGCATCTTCCAAAAGCTTCAGTAGATACTTTAGCGTTGGCGTGTGGACCTCCGCCGATGATTAAGTTTGCCGTGCAACCCAACTTGGAGAAGATGAACTATGACACTGAGAGCTCATTACTGATTTTTTAG 2700 53.81 MATSVRNRQFPHLEPSFNGGVRNCNFPSSISEFVNPKKPVTMADDDDFSSDEDNESDFSDLIRKGMSELEPSILDARDLGTVDAWIQRNASMIRLTGKHPFNSEAPLARLMHHGFITPVPLHYVRNHGPVPMAKWDDWTVEVCGLVKNPTRFTMDQLVREFRTREFPATLVCAGNRRKEQNMVKQTIGFNWGAAAVSTSVWRGVPLRDVLKRCGIFSSKKGALNVCFEGAESLPGGGGSKYGTSLRKEIAMDPARDMILAYMQNGEVLTPDHGFPVRLIVPGFIGGRMVKWLKRIIVTTQESDSYYHYRDNKVLPSHVDAELANSEAWWYKPEYVIGELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTMDGGESWHVCALDRPEKGNKYGKYWCWCFWSLEVEVLHLLGAKQIAVRAWDETFNTQPENLIWNLMGMMNNFWFRVKTNMCKPHKGEIGIVFEHPTLPANQAGGWMAKERHLEISTETNQSLKKSVSTPFINTASKTYSMSDVKTHNSDQSAWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSSSNSPNNSVHGPASINSPFHLTPITEITPPTRRVALVPREKIPCKLISKTSISHDVRRFRFALPSADQVLGLPVGKHIFLCARVDGKLCMRAYTPTSGVDEVSHFDLVVKIYLKNVHPKFPNGGPMSQHLESLPLGSELEVKGPLGHIEYVGRGNFVVDGKRKHAKKLAMLAGGTGITPIYQVAQAILKDSEDETEMFLVYANRTEDDILLREEMDEWVKSDKRFKVWYVVKESVREGWEFSVGVVTESIMREHLPKASVDTLALACGPPPMIKFAVQPNLEKMNYDTESSLLIF 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5414020 5417434 + MC11g0680 Mch11g0805 679739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0805 899 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 520 595 IPR001199 -
Mch11g0805 899 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 551 558 IPR018506 GO:0020037(InterPro)
Mch11g0805 899 SUPERFAMILY Riboflavin synthase domain-like 636 755 IPR017938 -
Mch11g0805 899 Pfam Cytochrome b5-like Heme/Steroid binding domain 525 594 IPR001199 -
Mch11g0805 899 FunFam NADH-cytochrome b5 reductase 634 749 - -
Mch11g0805 899 Gene3D - 750 899 IPR039261 -
Mch11g0805 899 PANTHER SULFITE REDUCTASE 48 468 - GO:0006790(PANTHER)|GO:0008482(PANTHER)|GO:0020037(PANTHER)|GO:0043546(PANTHER)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 269 282 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 93 107 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 408 418 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 285 298 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 336 348 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 367 381 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 168 179 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 194 209 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 252 268 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 179 191 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 115 131 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 381 393 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 446 459 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Eukaryotic molybdopterin domain signature 433 445 IPR008335 GO:0016491(InterPro)
Mch11g0805 899 Pfam Mo-co oxidoreductase dimerisation domain 334 464 IPR005066 GO:0016491(InterPro)|GO:0030151(InterPro)
Mch11g0805 899 CDD eukary_NR_Moco 78 463 - -
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 695 702 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 554 564 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 799 808 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 867 875 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 811 822 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 773 792 IPR001709 GO:0016491(InterPro)
Mch11g0805 899 Pfam Oxidoreductase molybdopterin binding domain 127 306 IPR000572 -
Mch11g0805 899 Gene3D Translation factors 634 749 - -
Mch11g0805 899 SUPERFAMILY E set domains 338 463 IPR014756 -
Mch11g0805 899 Gene3D - 338 513 - -
Mch11g0805 899 CDD cyt_b5_reduct_like 648 893 - -
Mch11g0805 899 PIRSF Nitr_rd_NADH 20 898 IPR012137 GO:0006809(InterPro)|GO:0042128(InterPro)|GO:0050464(InterPro)
Mch11g0805 899 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 519 597 IPR036400 -
Mch11g0805 899 FunFam Nitrate reductase [NADH] 750 899 - -
Mch11g0805 899 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 75 336 IPR036374 -
Mch11g0805 899 FunFam Nitrate reductase 79 328 - -
Mch11g0805 899 Pfam Oxidoreductase FAD-binding domain 648 754 IPR008333 -
Mch11g0805 899 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 743 893 IPR039261 -
Mch11g0805 899 Gene3D - 516 596 IPR036400 -
Mch11g0805 899 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 643 755 IPR017927 GO:0016491(InterPro)
Mch11g0805 899 Gene3D - 78 328 IPR036374 -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 740 754 - -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 867 875 - -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 695 702 - -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 773 792 - -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 674 685 - -
Mch11g0805 899 PRINTS Cytochrome B5 reductase signature 811 822 - -
Mch11g0805 899 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 144 179 IPR022407 GO:0043546(InterPro)
Mch11g0805 899 FunFam Nitrate reductase 338 514 - -
Mch11g0805 899 Pfam Oxidoreductase NAD-binding domain 774 881 IPR001433 GO:0016491(InterPro)
Mch11g0805 899 PRINTS Cytochrome B5 signature 570 577 IPR001199 -
Mch11g0805 899 PRINTS Cytochrome B5 signature 545 555 IPR001199 -
Mch11g0805 899 PRINTS Cytochrome B5 signature 582 594 IPR001199 -
Mch11g0805 899 PRINTS Cytochrome B5 signature 555 569 IPR001199 -
Mch11g0805 899 SMART Cyt_b5_2 523 595 IPR001199 -
Mch11g0805 899 FunFam Nitrate reductase 516 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0805 K10534 - - csv:101216001 1485.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0805 Mch-Chr11:5414020 Mch4g1730 Mch-Chr4:20423524 0 dispersed
Mch4g2591 Mch-Chr4:26285200 Mch11g0805 Mch-Chr11:5414020 4.16E-58 transposed
Mch11g0805 Mch-Chr11:5414020 Mch4g1728 Mch-Chr4:20412627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90