Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0820 ATGTCACTGAGCCCACCTCGTGCAACAACCAACCCCAACATCAGGACCTTCGACCTCTACTGGTGCTACCAATGCCACCGCGCGGTCAGGCTCGCCGCCGCGCACTCCTCCGACCTCACCTGCCCGCGCTGTTTCGGGCACTTCCTCGAAGAGCTCCACGTCCCTCGCCCCACCCAGCTCGACCTCTCGCCGGAGGCCAGATTGCTCGAAGCCCTTTCGCTAATGCTCGACCCGCCGGTTCGGCTCGTGAATTTCAGACTCCCGGACCCGGAACATGAACCCCGCCGCCGTCCACTCTGGCAATTTTTCGACGATTTCGACAGGAGACCGCTTCGCGATCTGGAAGGAGACGATTCCCTCCGGTGGCGAACACGGCGCCGTAACCGGAGCCTGGATGAGAGGGAAAGTTCCGGCCTAGGACTAGAACCCCCAAGTCGGAACCAGCCTCGAACTTTCATCGTTATCAGACCCATAGACCAATCTCGGCCGATGCAGCCCCTAATTCCACCGGGCGCCAATCCAAGAGACTACTTTGCCGGACCACGACTGGACGACTTAATCGAAGAACTGACGCAGAACGACCGACCGGGGCCGCCGCCGGCGAGCGATGCGGCGATCGAGGGGATACCGACGGTGAAGATAGTGGCGGAGCATCTGAAGAACGATTCGCACTGTCCGGTTTGTAAGGAGGAGTTTGAGGTGGGAGGAGAAGCGAGGGAATTGAACTGCAAGCACATATACCATTCGGACTGCATCGTGCCATGGCTAAGGCTCCATAACTCTTGTCCGGTGTGCAGGCAAGAGATGCCGCCATTGCCGCCAGCGCCGGAGAATCGAGGACCGGGAAGTTCTCAGGACGGCGAAGGGATTGGGAGAAGATGTGCCCGTTGGTGGGGCCAGTTGGTTTCTAGGCCATTTCGAAATAGGTATCGCCAGATTACCCCTCACGACCAGGAGAACATTCCTCCTCGAGGTATTTTGTTCCATTCTCCAGAAGTAAATTCGTGGGGTGGTTCAATCTACCTCTCTTCCTTGGCCCTTCTAATGTCGATGTTTATGCTGCAAGTAACCTGGTTTTTACTTGAACCTCTTCGT 1095 57.53 MSLSPPRATTNPNIRTFDLYWCYQCHRAVRLAAAHSSDLTCPRCFGHFLEELHVPRPTQLDLSPEARLLEALSLMLDPPVRLVNFRLPDPEHEPRRRPLWQFFDDFDRRPLRDLEGDDSLRWRTRRRNRSLDERESSGLGLEPPSRNQPRTFIVIRPIDQSRPMQPLIPPGANPRDYFAGPRLDDLIEELTQNDRPGPPPASDAAIEGIPTVKIVAEHLKNDSHCPVCKEEFEVGGEARELNCKHIYHSDCIVPWLRLHNSCPVCRQEMPPLPPAPENRGPGSSQDGEGIGRRCARWWGQLVSRPFRNRYRQITPHDQENIPPRGILFHSPEVNSWGGSIYLSSLALLMSMFMLQVTWFLLEPLR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5526289 5528211 + MC11g0690 Mch11g0820 679754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0820 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 270 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch11g0820 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 272 IPR013083 -
Mch11g0820 365 SMART ring_2 225 265 IPR001841 -
Mch11g0820 365 FunFam E3 ubiquitin-protein ligase RING1-like 189 272 - -
Mch11g0820 365 Pfam Ring finger domain 224 266 IPR001841 -
Mch11g0820 365 SUPERFAMILY RING/U-box 205 273 - -
Mch11g0820 365 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630(InterPro)
Mch11g0820 365 CDD RING-H2_RNF126-like 225 266 - -
Mch11g0820 365 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Mch11g0820 365 MobiDBLite consensus disorder prediction 129 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0820 K11982 - - csv:101215288 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0529 Mch-Chr10:3460107 Mch11g0820 Mch-Chr11:5526289 1.37E-32 dispersed
Mch11g0820 Mch-Chr11:5526289 Mch1g0486 Mch-Chr1:9262164 1.10E-43 dispersed
Mch11g0820 Mch-Chr11:5526289 Mch9g1544 Mch-Chr9:17751206 1.26E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35