Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0821 ATGGCAAAGGAGGTTTACACCAGGGAAGAGTTGCTAGCGTTGTTGCAGGATCATCAAATTCATTTTTCCAAGTACGAACATCCAGCTGTATTGACGGTTGAAGCTCAGGCAAAATATGTTGGAAATCTGGGGGGTGGACTCAGTAAGAATCTGTTTTTGAAGGACAAAAAGAATAGATACTACATCGTTTCTGCATTGGCAGACACCAAAGTGGACCTGAAAGTTCTATCTGCAAGACTTGGTTTGGGGAAAGGAGGTCTGAGAATGGCTCCTGAGGAAGCATTGGGTGAGAAACTTAAGGTATCTCTTGGTAGTGTTACTCCGTTTGCACTCATCAATAAAACAGCGCGAGATGTCGCATTGTTGTTGGACCAAGGATTTAAAAGCCAGGAATTCTGCTTCTTCCACCCTTTGTCAAATGAAACCTCAATATCCCTTAATGCCAGTAATCTCGACAAGTTCCTTAAAGTGATTGGGAGAGACCCTTCATATGTTGACTTGGAGGCTAACCCTTCTGTAGGAAAGGATCAACCCCCTGATCTTGCTGGACTTGTTCCATCTGGTACGGCCTTTGTGCCGGATACTCCAGAGAAAGCATCTTCATGTCCAAATTCGATTGAAAATCATGGTGTTGTAGACAAAAAGAAGTCTAAGGTAGTTGCAGGGGACACAGCCAAACCATCTACTGCTGTCAAAGTTGCAAAGGACAAACCTGTACCAACAGTACGAACATCCCATGCAAATGTGGAGCAATTTGTGGAAGAGATCCTTAATAAGACGTCGGCAATAGTGCTCTCAGAGCTCACAGAGGAGACTGTTAGGAAACATGGAGAGCAATTGGGAACTGTGGTGTCAAACAGCATCAAGAGCCATCTTAGCTCGGAGTTGAACAATCTTTCTATGATATTTAAGAACACTGCATACACAGAAGGGTTTCACGCTGGATCTTCCCATAAAGTAAAGCATGCATGCTGA 975 43.79 MAKEVYTREELLALLQDHQIHFSKYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSALADTKVDLKVLSARLGLGKGGLRMAPEEALGEKLKVSLGSVTPFALINKTARDVALLLDQGFKSQEFCFFHPLSNETSISLNASNLDKFLKVIGRDPSYVDLEANPSVGKDQPPDLAGLVPSGTAFVPDTPEKASSCPNSIENHGVVDKKKSKVVAGDTAKPSTAVKVAKDKPVPTVRTSHANVEQFVEEILNKTSAIVLSELTEETVRKHGEQLGTVVSNSIKSHLSSELNNLSMIFKNTAYTEGFHAGSSHKVKHAC 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5528671 5533089 - MC11g_new0131 Mch11g0821 679755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0821 324 Pfam Aminoacyl-tRNA editing domain 27 153 IPR007214 GO:0002161(InterPro)
Mch11g0821 324 CDD PrdX_deacylase 8 165 - -
Mch11g0821 324 FunFam Putative prolyl-tRNA synthetase 3 172 - -
Mch11g0821 324 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 6 317 IPR040285 -
Mch11g0821 324 SUPERFAMILY YbaK/ProRS associated domain 7 167 IPR036754 GO:0002161(InterPro)
Mch11g0821 324 Gene3D - 2 174 IPR036754 GO:0002161(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0821 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34