Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0824 ATGGGAGCAGAAACAGGGCTTGCAATGTTCTGTGGAGCCATCCACAAAATAAAGCCCTATTTGGCCATGGTTTCCCTTCAATTCGGGTACGCTGGCATGTACATCGTCACACTCCTTTGTTTTAAGAAGGGCATGAGTCATTACGTTCTCGCCGTCTACCGACATGTCGTCGCCACTATTGTCATCTCCCCCTTTGCCCTCGTCCTCGAAAGGAAAATAAGACCAAAGTTGACACTCCCCATAATTTTACGCATAATGCTCCTCGGCTTTCTCGAGCCAGTGCTGGATCAAAATCTTTATTACGTGGGCTTGAAGTTTACTTCAGCAACATTCACGTCTGTCACTCTTAATATTCTCCCTGCTGTTACCTTCATCATGGCTCTCATTTTCAGGCTGGAAAGTGTGAACTTCAAGAAAATCCGCAGCATAGCGAAGGTGGCGGGAACGGTGGTGACGATCGGAGGAGCCATGGTGATGACTCTATACAAAGGGCCAATCGTGGAGATCTTCCACGGCGCGGGGCGGCACGCGGCCCACCAGAGCAGCAGCGAGTCCGCGGACCAGCACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATCATCGGCTGGTCCGGCTTCTTCATCTTGCAATCCTTCACCCTCAAGAAGTACCCTGCTGAGCTGTCCCTCACCGCCCTCATCTGCCTAGCTGGCACCCTCGAAGGCTCCATCGTCACCCTCATCATGGAGCGCGATTTCTCCGTCTGGGTCATCGGCTGGGACTCCCGCCTCCTCGCCGCCGTCTACACTGGTGTCATTTGCTCTGGGCTTGCGTATTACATACAAGGCGTGGTGATCCGCCAACGTGGCCCGGTTTTCGTTACCTCTTTTACCCCTCTATGCATGATCATCACCGCCATCCTCGGCTCCATTGTGTTGGCTGAACAAATCCACCTCGGAAGTATAATTGGAGCCGTTTTCATAGTGATGGGGCTGTACTTGGTGGTGTGGGGCAAGGCCAGGGACCATCTCAATTCGTTGATGAATCAGAAAGGCGCCGCCGCCGCCACCCAATTGCCGATCACCGCCGAGCCGGAGACCAATTCCGCCGCCAAGGCTCCGCCGGCCTGA 1113 54.63 MGAETGLAMFCGAIHKIKPYLAMVSLQFGYAGMYIVTLLCFKKGMSHYVLAVYRHVVATIVISPFALVLERKIRPKLTLPIILRIMLLGFLEPVLDQNLYYVGLKFTSATFTSVTLNILPAVTFIMALIFRLESVNFKKIRSIAKVAGTVVTIGGAMVMTLYKGPIVEIFHGAGRHAAHQSSSESADQHWVLGTLMLLGSIIGWSGFFILQSFTLKKYPAELSLTALICLAGTLEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRQRGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAVFIVMGLYLVVWGKARDHLNSLMNQKGAAAATQLPITAEPETNSAAKAPPA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5557448 5560490 + MC11g0692 Mch11g0824 679758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0824 370 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020(InterPro)
Mch11g0824 370 Pfam EamA-like transporter family 27 146 IPR000620 GO:0016020(InterPro)
Mch11g0824 370 PANTHER WAT1-RELATED PROTEIN 21 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Mch11g0824 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
Mch11g0824 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0824 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0824 Mch-Chr11:5557448 Mch4g1762 Mch-Chr4:20633828 7.02E-146 dispersed
Mch11g0824 Mch-Chr11:5557448 Mch4g1761 Mch-Chr4:20627065 3.60E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g284 . Blo12g00672 . . Bpe02g00072 . . Bma01g02646 Cmo04g02464 . . Cma09g00799 . . . . . Bhi04g01968 . . . Hepe03g1048 . . Cla08g00578 Cam08g0993 Cec08g0581 Cco08g0692 Clacu08g0702 . Cre08g0513 . . . . . Csa04g01808 . Cme03g00574 Blo17g00181 . . . . . . . . . Cmo09g00792 . . . Car09g00716 . . Bhi09g02666 . . . . Mch11g0824 . . . . . . . . Lsi08g00420 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0947 . 1 757 Nodulin-like Gene Family AT4G19180 60.3 2.3e-249 858.6
Mch11g0858 . 17 277 Nodulin-like Gene Family AT3G45870 69.7 1.2e-97 353.2
Mch4g2238 . 1 365 Nodulin-like Gene Family AT3G28050 61.6 1.3e-120 429.9
Mch10g1574 . 2 326 Nodulin-like Gene Family AT5G47470 59.9 1.4e-104 376.7
Mch4g2238 . 1 332 Nodulin-like Gene Family AT5G40230 54.0 3.6e-94 342.0
Mch8g1544 . 9 275 Nodulin-like Gene Family AT5G40230 50.4 3.7e-67 252.3
Mch4g2238 . 1 356 Nodulin-like Gene Family AT5G40240 50.1 7.4e-92 334.3
Mch8g0813 . 16 279 Nodulin-like Gene Family AT3G53210 57.6 3.1e-84 308.5
Mch11g0152 . 16 278 Nodulin-like Gene Family AT3G53210 60.1 6.5e-82 300.8
Mch1g0746 . 99 332 Nodulin-like Gene Family AT2G37450 65.4 1.7e-82 302.8
Mch9g1572 . 113 348 Nodulin-like Gene Family AT2G37450 55.1 7.7e-67 250.8
Mch4g1761 . 99 332 Nodulin-like Gene Family AT2G37450 52.8 1.3e-66 250.0
Mch11g0824 . 104 337 Nodulin-like Gene Family AT2G37450 53.6 1.6e-64 243.0
Mch4g1762 . 101 338 Nodulin-like Gene Family AT2G37450 53.3 3.0e-63 238.8
Mch1g0746 . 12 332 Nodulin-like Gene Family AT2G37460 70.4 2.0e-124 442.6
Mch4g1761 . 9 356 Nodulin-like Gene Family AT2G37460 50.4 1.4e-98 356.7
Mch9g1572 . 11 348 Nodulin-like Gene Family AT2G37460 55.3 2.5e-98 355.9
Mch11g0824 . 16 362 Nodulin-like Gene Family AT2G37460 50.7 9.6e-95 344.0
Mch4g2113 . 11 335 Nodulin-like Gene Family AT2G37460 53.8 8.2e-94 340.9
Mch5g1316 . 54 381 Nodulin-like Gene Family AT2G37460 53.6 6.1e-89 324.7
Mch4g1762 . 13 338 Nodulin-like Gene Family AT2G37460 51.5 3.7e-86 315.5
Mch8g0813 . 1 393 Nodulin-like Gene Family AT1G75500 73.6 3.2e-162 568.2
Mch11g0152 . 12 393 Nodulin-like Gene Family AT1G75500 74.1 4.4e-151 531.2
Mch6g0404 . 7 344 Nodulin-like Gene Family AT1G75500 61.6 8.3e-118 420.6
Mch9g2219 . 39 401 Nodulin-like Gene Family AT1G60050 50.8 1.8e-93 339.7
Mch1g0746 . 12 332 Nodulin-like Gene Family AT5G13670 53.1 8.4e-91 330.9
Mch9g1572 . 12 390 Nodulin-like Gene Family AT2G39510 57.6 5.5e-119 424.5
Mch4g2113 . 12 338 Nodulin-like Gene Family AT2G39510 61.1 1.6e-113 406.4
Mch1g0746 . 13 346 Nodulin-like Gene Family AT2G39510 60.8 1.0e-112 403.7
Mch11g0824 . 13 340 Nodulin-like Gene Family AT2G39510 57.0 9.8e-100 360.5
Mch1g0473 . 16 369 Nodulin-like Gene Family AT2G39510 51.2 1.2e-97 353.6
Mch5g1316 . 55 379 Nodulin-like Gene Family AT2G39510 53.8 1.2e-92 337.0
Mch4g2116 . 1 307 Nodulin-like Gene Family AT2G39510 51.1 1.3e-80 297.0
Mch8g1544 . 9 244 Nodulin-like Gene Family AT4G15540 51.9 2.0e-62 236.5
Mch4g1761 . 4 259 Nodulin-like Gene Family AT4G08290 67.1 1.5e-92 336.3
Mch11g0824 . 14 264 Nodulin-like Gene Family AT4G08290 51.8 1.9e-71 266.2
Mch11g0824 . 12 356 Nodulin-like Gene Family AT4G08300 64.9 4.8e-123 438.0
Mch4g1762 . 9 353 Nodulin-like Gene Family AT4G08300 57.2 1.2e-105 380.2
Mch4g1761 . 7 360 Nodulin-like Gene Family AT4G08300 50.7 5.9e-97 351.3
Mch1g0473 . 12 334 Nodulin-like Gene Family AT4G08300 50.8 1.9e-87 319.7
Mch1g0746 . 13 339 Nodulin-like Gene Family AT4G08300 50.3 2.8e-86 315.8
Mch2g1699 . 6 258 Nodulin-like Gene Family AT5G64700 63.0 4.6e-80 294.7
Mch2g1695 . 1 252 Nodulin-like Gene Family AT5G64700 53.9 4.8e-69 258.1
Mch8g2697 . 1 331 Nodulin-like Gene Family AT4G30420 55.3 2.6e-95 345.9
Mch9g1707 . 6 387 Nodulin-like Gene Family AT5G07050 68.1 1.0e-142 503.4
Mch5g1316 . 50 381 Nodulin-like Gene Family AT5G07050 67.8 1.1e-125 446.8
Mch1g0473 . 10 334 Nodulin-like Gene Family AT5G07050 66.2 1.5e-122 436.4
Mch11g0824 . 18 337 Nodulin-like Gene Family AT5G07050 52.4 2.3e-94 342.8
Mch1g0473 . 13 402 Nodulin-like Gene Family AT3G56620 54.1 9.2e-106 380.6
Mch5g1316 . 52 394 Nodulin-like Gene Family AT3G56620 52.9 1.3e-99 360.1
Mch9g1707 . 14 342 Nodulin-like Gene Family AT3G56620 55.1 1.0e-96 350.5
Mch9g2219 . 50 408 Nodulin-like Gene Family AT1G70260 54.6 8.6e-104 374.0
Mch8g2753 . 2 336 Nodulin-like Gene Family AT1G09380 56.3 8.0e-110 394.0
Mch6g2758 . 4 333 Nodulin-like Gene Family AT1G09380 61.0 1.4e-109 393.3
Mch1g0473 . 13 349 Nodulin-like Gene Family AT2G40900 61.7 1.1e-109 393.7
Mch5g1316 . 49 404 Nodulin-like Gene Family AT2G40900 54.5 1.9e-106 382.9
Mch9g1707 . 14 335 Nodulin-like Gene Family AT2G40900 56.5 7.9e-100 360.9
Mch6g0404 . 1 351 Nodulin-like Gene Family AT3G18200 70.2 9.9e-132 466.8
Mch8g0813 . 16 356 Nodulin-like Gene Family AT3G18200 58.4 7.7e-108 387.5
Mch11g0152 . 16 358 Nodulin-like Gene Family AT3G18200 54.2 1.2e-97 353.6
Mch11g0824 . 12 356 Nodulin-like Gene Family AT1G44800 65.5 1.1e-124 443.4
Mch4g1762 . 9 370 Nodulin-like Gene Family AT1G44800 54.7 1.2e-105 380.2
Mch4g1761 . 7 362 Nodulin-like Gene Family AT1G44800 51.1 5.7e-100 361.3
Mch1g0473 . 12 334 Nodulin-like Gene Family AT1G44800 51.5 7.7e-89 324.3
Mch5g1316 . 48 379 Nodulin-like Gene Family AT1G44800 50.3 2.5e-87 319.3
Mch11g0858 . 101 371 Nodulin-like Gene Family AT5G45370 67.3 7.3e-100 360.5
Mch11g0824 . 12 314 Nodulin-like Gene Family AT1G21890 64.7 1.1e-113 406.8
Mch4g1762 . 9 314 Nodulin-like Gene Family AT1G21890 55.1 2.6e-94 342.4
Mch4g1761 . 5 309 Nodulin-like Gene Family AT1G21890 52.5 9.1e-92 334.0
Mch5g1316 . 47 357 Nodulin-like Gene Family AT1G21890 51.4 4.4e-86 315.1
Mch1g0746 . 11 313 Nodulin-like Gene Family AT1G21890 50.6 5.6e-81 298.1
Mch8g1091 . 1 569 Nodulin-like Gene Family AT1G80530 60.0 2.4e-187 652.1
Mch10g0928 . 1 414 Nodulin-like Gene Family AT4G19450 69.4 4.5e-154 541.2
Mch7g0789 . 22 420 Nodulin-like Gene Family AT4G19450 56.0 2.8e-124 442.2
Mch6g0203 . 9 537 Nodulin-like Gene Family AT1G74780 61.0 2.2e-182 635.6
Mch6g0200 . 6 523 Nodulin-like Gene Family AT1G74780 58.5 1.3e-169 593.2
Mch6g0201 . 1 327 Nodulin-like Gene Family AT1G74780 56.0 3.2e-96 349.4
Mch2g1001 . 9 559 Nodulin-like Gene Family AT4G34950 69.9 6.0e-218 753.8
Mch4g2598 . 6 590 Nodulin-like Gene Family AT5G14120 70.8 8.2e-239 823.2
Mch2g1001 . 9 405 Nodulin-like Gene Family AT2G16660 66.5 1.3e-142 503.1
Mch9g1814 . 38 601 Nodulin-like Gene Family AT2G39210 69.6 6.4e-226 780.4
Mch4g2023 . 20 561 Nodulin-like Gene Family AT2G39210 62.4 8.4e-202 700.3
Mch9g1815 . 75 629 Nodulin-like Gene Family AT2G39210 63.1 1.5e-198 689.5
Mch5g1718 . 1 563 Nodulin-like Gene Family AT2G39210 61.7 4.3e-198 688.0
Mch1g0852 . 16 573 Nodulin-like Gene Family AT2G39210 59.5 3.9e-191 664.8
Mch3g0550 . 4 547 Nodulin-like Gene Family AT2G39210 58.0 2.8e-181 632.1
Mch3g0535 . 16 557 Nodulin-like Gene Family AT2G39210 52.2 1.8e-156 549.7
Mch10g0928 . 6 561 Nodulin-like Gene Family AT3G01630 52.5 2.3e-148 522.7
Mch4g2598 . 6 428 Nodulin-like Gene Family AT3G01930 71.5 1.0e-172 603.2
Mch6g0203 . 9 540 Nodulin-like Gene Family AT1G18940 56.4 6.7e-171 597.4
Mch6g0200 . 1 523 Nodulin-like Gene Family AT1G18940 53.2 8.8e-155 543.9
Mch6g0201 . 1 325 Nodulin-like Gene Family AT1G18940 52.1 2.6e-90 329.7
Mch6g0203 . 8 538 Nodulin-like Gene Family AT2G34350 58.5 9.0e-168 587.0
Mch6g0200 . 7 521 Nodulin-like Gene Family AT2G34350 53.3 1.2e-148 523.5
Mch6g0201 . 1 327 Nodulin-like Gene Family AT2G34350 52.1 1.7e-86 317.0
Mch3g0550 . 1 552 Nodulin-like Gene Family AT2G28120 70.1 7.2e-219 756.9
Mch9g1814 . 50 602 Nodulin-like Gene Family AT2G28120 62.3 4.6e-197 684.5
Mch5g1718 . 19 556 Nodulin-like Gene Family AT2G28120 61.9 1.7e-188 656.0
Mch4g2023 . 19 561 Nodulin-like Gene Family AT2G28120 58.5 3.3e-179 625.2
Mch1g0852 . 12 567 Nodulin-like Gene Family AT2G28120 59.1 1.8e-177 619.4
Mch3g0535 . 13 561 Nodulin-like Gene Family AT2G28120 57.0 6.9e-177 617.5
Mch3g0542 . 7 559 Nodulin-like Gene Family AT2G28120 54.9 9.6e-171 597.0
Mch3g0549 . 7 550 Nodulin-like Gene Family AT2G28120 56.1 9.0e-169 590.5
Mch9g1815 . 77 630 Nodulin-like Gene Family AT2G28120 54.8 9.0e-169 590.5
Mch3g0543 . 1 580 Nodulin-like Gene Family AT2G28120 53.4 7.6e-168 587.4
Mch3g0539 . 1 532 Nodulin-like Gene Family AT2G28120 52.1 4.3e-155 545.0
Mch3g0544 . 4 532 Nodulin-like Gene Family AT2G28120 52.4 7.4e-155 544.3
Mch10g0928 . 1 566 Nodulin-like Gene Family AT1G31470 55.7 1.0e-167 587.0
Mch7g0789 . 20 582 Nodulin-like Gene Family AT1G31470 54.0 2.0e-160 562.8
Mch11g1402 . 31 215 Nodulin-like Gene Family AT1G76800 77.8 4.2e-70 261.2
Mch4g1881 . 14 215 Nodulin-like Gene Family AT1G76800 72.3 6.1e-69 257.3
Mch4g0945 . 3 194 Nodulin-like Gene Family AT1G76800 64.6 6.8e-60 227.3
Mch4g0945 . 7 194 Nodulin-like Gene Family AT3G25190 69.1 8.7e-64 240.4
Mch4g1881 . 5 215 Nodulin-like Gene Family AT3G25190 60.8 5.3e-61 231.1
Mch11g1402 . 31 215 Nodulin-like Gene Family AT3G25190 61.0 9.6e-55 210.3
Mch4g1881 . 17 215 Nodulin-like Gene Family AT1G21140 71.9 1.6e-72 269.2
Mch11g1402 . 27 215 Nodulin-like Gene Family AT1G21140 76.2 7.9e-72 266.9
Mch4g0945 . 8 194 Nodulin-like Gene Family AT1G21140 67.9 6.1e-64 240.7
Mch4g1881 . 17 212 Nodulin-like Gene Family AT3G43630 73.5 3.9e-71 264.6
Mch11g1402 . 31 212 Nodulin-like Gene Family AT3G43630 77.5 5.7e-70 260.8
Mch4g0945 . 8 191 Nodulin-like Gene Family AT3G43630 66.3 1.4e-60 229.6
Mch4g1881 . 2 215 Nodulin-like Gene Family AT3G43660 67.8 5.1e-71 264.2
Mch11g1402 . 35 215 Nodulin-like Gene Family AT3G43660 75.1 3.1e-68 255.0
Mch4g0945 . 8 194 Nodulin-like Gene Family AT3G43660 64.7 5.6e-62 234.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003731 1 1 1 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 2 3 4 1 44