Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0853 ATGTTGAAGCCGAAGACCTTCGCCGGAGCCAACGTGTTCATGTCTCGCAATCTTGTTGCTCCGGAGATATTCGACGCTGTCCACGATGCTCTGAAGCAGAATGGGGCTGAGGTCTTCCTCTGCTGCGATCCCTCACGAAACGGGCCTAACGATTATCACGTTATATCCTCCGCCGATCATGAAAAGTTTGAGGATCTTCGAGCGAAGGGATGCAATTTGCTAGGTCCTCAGTGCGTGCTTTCATGTGCAAAGGAGCACAGACCTCTTCCTCAACAGGGTTTTACTTGTTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCTGGTTTCCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACTAAAGCATCTCTAGATGTCAGCTTTGTCATTGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATTGTCACAATTGGTTGGTTACAACAGTGCTGGATTGAGCATCGTGTAGTGCCTCAGGAGGCATATCGAGTTCTTCCATTTTCTGGATTGAATATTTCTGTATCTAGAATTCCAGCAGGTAATGAGCGCAAGGAGATCGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTGTGCTGATCTTACGAGAAAGTGTACACATTTGATATCTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGCCATATCAATATTGTTACTCGGAAATGGTTTGATCAATCCGTAGCTAGAAGAGCATGTCTTAATGAGGAGTCATATCCTGTTGGTAGCGTTGGAGCTTCAAATAAGATGGCAAGGGGTTGCTTGACTGCTCAAAATAGCCAAGACAAGGTTATGGGGAACTTGCAAGCTGCACCATCCTCATTGGTTGCCGATTCAAATTTCTCAGCAGTCTCTGGTCCAGGGTTTTCAGATATGGATTTAGAGCCTTCCTTGTCACAGAATACTTCTATGTTTTCAGATGCTACTCATTGTATAAATGAGGTTGATGTTGAAGTGCCTGTTACGACAGCAAAGACTGAAACATACAGTAATAATTGTATTACGAGTGACTTCCAATCTGAAGACAATGACCTGTATTTATCAGCATGTAGAATAAAAGTTGTTGGGTTCGAAGCCTCTGAGTTGCGCAAGATTGTCAATATGATTCGCGGAGGTGGAGGCTCCCGATTTATCCTGTCCAACAACAAGTTAACACACATAATAGTTGGAAATCTGTCAGAAATGGAGAAAAAAGAGGTAAGAGATATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTGGTAGACACATGGCCTATGATGCACTTATCCCTAAAGCATCCAGTAAAGCAAGCACCATCGATATGGATCAGAATAAAGTTCCAATTGTTCATCCAACCATACCATCAAATGAGTTAGAAGGAAGTATTCAAGTTAGAATTGGTAAGCCATCAATGATAGAGGAAAAAATTGAAGAAAAAAGTGAAGCAAATGTGAGTGGAGACAGGACCATGAAATTACCCCAGAAAAGGCAACCTCCTGTATCAAATGGTATAAACAAGAGTCAAGAAAAGATGCGGCCTGATTTCACTGTTCAAAATGGGAAGTCATCATGTGTGTTTAAGGGGAAAATATTTTGCTTTTCAAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGAAGGTTGTTGAGGATCATATGAAACAGAAAGTGCACTTCACGGTTGAATGTCATGGTGTTACACTAAGGAGTTCGAGCATTCAAACTATATATGTGTCGAGTCATTGGGTTCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGTCTGGATTTGAAAATATTCGGTTCTGTGTTTCACAATATGGAGATAAAGATAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACTAAGAAGGTAACCCACCTAATATGCAAATTTTCCAATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAACTACAGCTGAATGGATATACGAGTGTGTTAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACACAGAGGCAGGGTTATGCACTGTTAGTCAGTTTCCTACACAAGCTGTCCAAATGATAGCTAGAGAAAGTCAATCCCAGTTCCCAATACATTCTGCCATCCAGAATGACCAATCAGCTGGAACCATCGGTAGTTCTATGGGAGAGGTCAAACAACTAAGCTATATTAATAAAAAGCCCAAGCTTCTTGACGAAGCTAAACAGAAGTGTCCACTTTTTGTTGGAAATAGTCTCACTCACTCTGATTGCAATTTGAACTCCACCAAAGAAACTACATCAAAATCTTCTGTAGTAACTTCACATGTTCCTGATGTTGCTTCTGCAATTGAGGACTTGTTGGAGCAGACAAGTAAGATTCATGACCTGAAGTCACCTGGAAGGAAGGACTGCAATAAAAGTATTTTCCCGTCTGACTGTTCCATCGTTGGTCAAGACCAGGACCATTCAGAATCTCATCCAATTATTGGTTTATCTAACCCGTGGTTAAAAAGAACTGAGAGAAAAGAAGAAATTGGCAATCCTACTGGGGATGGAAGGGCAGGCATATATGATGGTTTTAGTGAAACGCAAACTGAGTCTCAGGTTGTGGGTTATGAAGAAGATTTATCGGGAAGGCAAATGCTGATAGACAGAGTTAGAACCTGGAGTAGCACGACTTGA 2910 41.72 MLKPKTFAGANVFMSRNLVAPEIFDAVHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNLLGPQCVLSCAKEHRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVTAMGGVLHTKASLDVSFVIVKNVLAAKYKWALNISKKPIVTIGWLQQCWIEHRVVPQEAYRVLPFSGLNISVSRIPAGNERKEIEKLILQNGGRYCADLTRKCTHLISPEGDKYKVARTWGHINIVTRKWFDQSVARRACLNEESYPVGSVGASNKMARGCLTAQNSQDKVMGNLQAAPSSLVADSNFSAVSGPGFSDMDLEPSLSQNTSMFSDATHCINEVDVEVPVTTAKTETYSNNCITSDFQSEDNDLYLSACRIKVVGFEASELRKIVNMIRGGGGSRFILSNNKLTHIIVGNLSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDALIPKASSKASTIDMDQNKVPIVHPTIPSNELEGSIQVRIGKPSMIEEKIEEKSEANVSGDRTMKLPQKRQPPVSNGINKSQEKMRPDFTVQNGKSSCVFKGKIFCFSSSFPEDRRAEIVEWINQGGGKVVEDHMKQKVHFTVECHGVTLRSSSIQTIYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFENIRFCVSQYGDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSNGPKYEAACKWGIHSTTAEWIYECVRQSKIVSLDLYRPKEVTAQDTEAGLCTVSQFPTQAVQMIARESQSQFPIHSAIQNDQSAGTIGSSMGEVKQLSYINKKPKLLDEAKQKCPLFVGNSLTHSDCNLNSTKETTSKSSVVTSHVPDVASAIEDLLEQTSKIHDLKSPGRKDCNKSIFPSDCSIVGQDQDHSESHPIIGLSNPWLKRTERKEEIGNPTGDGRAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTWSSTT 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5813129 5824503 - MC11g0718 Mch11g0853 679787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0853 969 SUPERFAMILY BRCT domain 565 650 IPR036420 -
Mch11g0853 969 SMART BRCT_7 563 638 IPR001357 -
Mch11g0853 969 SMART BRCT_7 658 734 IPR001357 -
Mch11g0853 969 SMART BRCT_7 373 453 IPR001357 -
Mch11g0853 969 SMART BRCT_7 97 174 IPR001357 -
Mch11g0853 969 SMART BRCT_7 184 260 IPR001357 -
Mch11g0853 969 Gene3D BRCT domain 186 270 IPR036420 -
Mch11g0853 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Mch11g0853 969 Pfam twin BRCT domain 665 726 IPR001357 -
Mch11g0853 969 Pfam twin BRCT domain 191 252 IPR001357 -
Mch11g0853 969 Pfam twin BRCT domain 103 166 IPR001357 -
Mch11g0853 969 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Mch11g0853 969 CDD BRCT 103 170 - -
Mch11g0853 969 Pfam BRCA1 C Terminus (BRCT) domain 565 609 IPR001357 -
Mch11g0853 969 CDD BRCT_TopBP1_rpt2_like 661 734 - -
Mch11g0853 969 ProSiteProfiles BRCT domain profile. 661 744 IPR001357 -
Mch11g0853 969 Gene3D BRCT domain 353 459 IPR036420 -
Mch11g0853 969 SUPERFAMILY BRCT domain 373 457 IPR036420 -
Mch11g0853 969 Gene3D BRCT domain 558 654 IPR036420 -
Mch11g0853 969 FunFam Transcription coactivator 558 654 - -
Mch11g0853 969 Gene3D BRCT domain 97 185 IPR036420 -
Mch11g0853 969 Gene3D BRCT domain 661 753 IPR036420 -
Mch11g0853 969 SUPERFAMILY BRCT domain 624 745 IPR036420 -
Mch11g0853 969 FunFam Transcription coactivator 97 185 - -
Mch11g0853 969 ProSiteProfiles BRCT domain profile. 561 648 IPR001357 -
Mch11g0853 969 MobiDBLite consensus disorder prediction 517 547 - -
Mch11g0853 969 Gene3D BRCT domain 31 94 IPR036420 -
Mch11g0853 969 CDD BRCT_TopBP1_rpt2_like 186 260 - -
Mch11g0853 969 FunFam Transcription coactivator 36 94 - -
Mch11g0853 969 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 966 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Mch11g0853 969 ProSiteProfiles BRCT domain profile. 371 463 IPR001357 -
Mch11g0853 969 FunFam Transcription coactivator 353 463 - -
Mch11g0853 969 ProSiteProfiles BRCT domain profile. 182 270 IPR001357 -
Mch11g0853 969 SUPERFAMILY BRCT domain 186 271 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0853 K10728 - - csv:101212525 1518.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G14700 65.6 5.3e-268 920.6
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G12620 68.3 6.9e-276 946.8
Mch8g0708 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.8 1.9e-145 512.3
Mch9g1918 . 9 377 Core DNA Replication Machinery Family AT2G01120 57.3 2.5e-128 455.7
Mch7g0665 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.2 4.1e-174 608.2
Mch8g1810 . 1 262 Core DNA Replication Machinery Family AT1G26840 67.2 6.7e-93 337.4
Mch4g0034 . 1 801 Core DNA Replication Machinery Family AT1G79150 60.1 1.8e-250 862.4
Mch5g1103 . 1 944 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1368.6
Mch1g2016 . 1 577 Core DNA Replication Machinery Family AT5G46280 81.0 2.2e-268 921.4
Mch4g0567 . 1 846 Core DNA Replication Machinery Family AT2G16440 75.0 0.0e+00 1179.9
Mch8g3014 . 64 799 Core DNA Replication Machinery Family AT2G07690 78.7 0.0e+00 1116.3
Mch1g2181 . 72 889 Core DNA Replication Machinery Family AT5G44635 69.0 0.0e+00 1120.1
Mch9g0661 . 9 720 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1217.6
Mch6g0781 . 38 548 Core DNA Replication Machinery Family AT2G29680 56.8 1.8e-152 536.2
Mch6g0781 . 42 509 Core DNA Replication Machinery Family AT1G07270 57.1 4.3e-137 485.0
Mch11g1097 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.6e-258 888.6
Mch9g0023 . 1 594 Core DNA Replication Machinery Family AT3G25100 75.8 9.0e-257 882.9
Mch5g1783 . 26 792 Core DNA Replication Machinery Family AT3G09660 72.6 1.1e-313 1072.4
Mch2g0991 . 1 415 Core DNA Replication Machinery Family AT2G20980 54.5 2.4e-112 402.5
Mch11g0853 . 1 970 Core DNA Replication Machinery Family AT1G77320 50.8 7.5e-264 907.1
Mch9g0405 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.5 1.4e-76 282.7
Mch11g1327 . 1 197 Core DNA Replication Machinery Family AT1G80190 66.5 5.0e-74 274.2
Mch10g0366 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 2.3e-60 228.4
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT1G19080 69.9 2.5e-72 268.5
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT3G55490 69.9 2.5e-72 268.5
Mch5g0403 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 5.1e-52 201.1
Mch2g1301 . 1 1540 Core DNA Replication Machinery Family AT5G67100 57.4 0.0e+00 1687.2
Mch2g1302 . 5 1373 Core DNA Replication Machinery Family AT5G67100 58.6 0.0e+00 1540.0
Mch7g0712 . 1 482 Core DNA Replication Machinery Family AT5G67100 56.9 6.9e-160 562.4
Mch9g2341 . 2 640 Core DNA Replication Machinery Family AT1G67630 58.3 1.6e-208 722.6
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch11g1789 . 1 448 Core DNA Replication Machinery Family AT5G41880 65.1 4.1e-177 617.8
Mch1g0987 . 7 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1794.6
Mch5g1437 . 82 530 Core DNA Replication Machinery Family AT2G42120 71.8 7.3e-195 676.8
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch2g0263 . 1 2086 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2972.6
Mch3g1547 . 1 2051 Core DNA Replication Machinery Family AT1G08260 69.5 0.0e+00 2874.0
Mch2g0263 . 9 2205 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2946.8
Mch3g1547 . 19 2158 Core DNA Replication Machinery Family AT2G27120 66.4 0.0e+00 2859.3
Mch3g1789 . 7 490 Core DNA Replication Machinery Family AT5G22110 68.5 1.7e-192 669.1
Mch2g0211 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.7 1.0e-307 1052.7
Mch10g1470 . 46 376 Core DNA Replication Machinery Family AT1G63160 90.6 5.9e-173 603.6
Mch1g0517 . 1 355 Core DNA Replication Machinery Family AT5G27740 85.4 1.3e-178 622.5
Mch11g0851 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.5 7.5e-152 533.5
Mch4g1788 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 4.0e-154 541.2
Mch8g3235 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.2 1.0e-250 862.8
Mch10g1720 . 34 697 Core DNA Replication Machinery Family AT2G06510 51.3 4.1e-196 681.4
Mch6g0297 . 7 638 Core DNA Replication Machinery Family AT5G08020 67.5 4.0e-244 840.9
Mch10g1720 . 10 800 Core DNA Replication Machinery Family AT5G45400 50.6 4.2e-223 771.5
Mch6g0297 . 7 635 Core DNA Replication Machinery Family AT5G61000 63.7 1.1e-236 816.2
Mch10g1720 . 5 815 Core DNA Replication Machinery Family AT4G19130 52.9 3.2e-225 778.5
Mch11g0615 . 1 274 Core DNA Replication Machinery Family AT2G24490 50.2 8.7e-69 257.3
Mch6g2735 . 1 383 Core DNA Replication Machinery Family AT5G26680 85.9 4.8e-188 654.1
Mch5g0260 . 1 1110 Core DNA Replication Machinery Family AT1G08840 53.2 1.0e-303 1039.6
Mch5g0930 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.1 4.7e-115 411.0
Mch2g0315 . 1 807 Core DNA Replication Machinery Family AT1G08130 66.5 4.8e-298 1020.4
Mch2g0315 . 206 807 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44