Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0856 | ATGGGGAGAGGAAAGATTGAGATAAAGAGGATTGAGAACTCAAGCAACAGACAAGTGACATATTCCAAGAGGAGAAATGGGATAATCAAGAAGGCCAAAGAGATTACTGTTTTATGTGATGCTCAAGTTTCTCTTGTCATTTTTGCAAGCTCTGGGAAGATGCATGAATATTGCAGCCCTTCTACGCCGTTGATTGATATTTTGGATAAGTACCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAAATGGATAGAGTCAAGAAAGAAAATGACAACATGCAGATTGAACTCAGACACCTGAGAGGGGAAGATATAACATCTCTGAACTACAAGGAACTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCAGAGTTCATCAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAATAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCGATGGGAGAGAGTGTGAGAGAAATGGATAATGGATACAATCAGAGAATGAGAGATTTCAACTCTCAGATGCCTTTTGCTTTCAGAGTGCAGCCTATTCAGCCAAATCTACAAGAAAGGATCTAA | 636 | 41.04 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFIKMMRTNERMMEEENKRLNYELYQKEMVAMGESVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5833313 | 5838238 | + | MC11g0721 | Mch11g0856 | 679790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0856 | 211 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g0856 | 211 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g0856 | 211 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 179 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch11g0856 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | Coils | Coil | 77 | 111 | - | - | |
Mch11g0856 | 211 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch11g0856 | 211 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0856 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0149 | Mch-Chr11:937908 | Mch11g0856 | Mch-Chr11:5833313 | 5.67E-42 | dispersed | |
Mch11g0856 | Mch-Chr11:5833313 | Mch1g2155 | Mch-Chr1:20720472 | 3.19E-34 | dispersed | |
Mch11g0856 | Mch-Chr11:5833313 | Mch8g2368 | Mch-Chr8:26794936 | 6.74E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42600 | PF01486 | K-box | 1.80E-18 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0856 | K09264 | - | csv:101222239 | 409.838 |