Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0882 ATGGGCTTCGATATGGTAAAATCGCAATGGCTACCGATTCTTCACCTCATACCCCTTTGCATTATAATGAGCAGAAGCAGTGGTATCAGTTCCGATGGTGAGGCACTTTTGAGCTTCAGAGCAGCAATTCTCGATTCTGATGGTGTTCTTCTTCAATGGAAACCAGAGGAACCCCATCCTTGTAACTGGAAAGGGGTAAAGTGTGATCCAAAAACCAAGAGAGTGATATACCTGAGTCTTCCTTATCACAGACTTAGTGGATCTTTGTCCCGTGAACTTGGAAAGCTTGACCACCTAAAAGTTTTAGCTCTACATGACAACAACTTCTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTGGGGAATCTCTCGGCACTGAAAAATTTAGACATTTCAAGTAATTCACTCGGTGGAAATATCCCCATCTCCCTTGGGAAGTTGAGCAAGCTTAGTACTCTAAATGTGTCTGCCAATTTTCTGGTTGGATCAATACCGTATGTTGGCGTGCTAATCAACTTCTCAGAAAGCTCATTTATTGGAAACCGTGGCTTATGTGGAAAGCAAATAAATGTTATGTGCAAAGATGATAAAGAGGGACCTGGAACAAATGAGTCACCATTCTCAGTGCAAAATCAAATTGGGAGGAGGAAGTACTCTGGCCGACTACTTATAAGTGCTTTGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTCATGTGTTTCTGGGGTTGCTTTCTATATAAAAAGTTCGGCAAAAACGACAGTAAAGGGCTTGTGTTGGACGTTTGTGGAGGTGCTTCGGTCGTAATGTTTCACGGAGACTTGCCATACTCATCCAAAGATATTATTAAGAAATTTGAGACATTGAATGAAGAACACATAATCGGTTGTGGGGGCTTCGGAACAGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGATGGATTTGATTGTTTTTTCGAGAGAGAGCTCGAAATCCTTGGAAGCATGAAGCACAGGTACCTTGTGAATTTGCGAGGATACTGCAATTCTCCTACATCAAAGCTATTGATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGTGTATCTGAGCAACTAGACTGGGATGCCCGCTTGAATATTATCATGGGGGCTGCAAAGGGACTTGCATACTTGCATCATGATTGCTCTCCACGGATCATTCACCGAGATATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGATTTTGGACTTGCAAAACTTTTAGAGGATGAAGAATCACATATCACGACTATTGTTGCAGGAACACTCGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACAGAGAAGACCGATGTATACAGTTTTGGAGTATTGGTACTGGAAGTGTTGAGTGGCAAGCGTCCCACCGATGCATCGTATATAGAAAAGGGCCTAAATATTGTTGGTTGGTTAAACTTTCTGGTCACGGAGAATCGACAACGAGAAATCGTCGATGTACAGTGTGAGGGCATCCAAACAGAAGGCCTCGACGCATTGCTTTCGGTTGCAATCCAATGTGTTTCGTCAAGTCCAGAGGATCGACCAACCATGCACAGGGTGGTCCAGTTACTGGAACCTGAGGTTATGACTCCATGCCCAAGCGATTTCTACGATACCGATTAA 1782 43.1 MGFDMVKSQWLPILHLIPLCIIMSRSSGISSDGEALLSFRAAILDSDGVLLQWKPEEPHPCNWKGVKCDPKTKRVIYLSLPYHRLSGSLSRELGKLDHLKVLALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLSTLNVSANFLVGSIPYVGVLINFSESSFIGNRGLCGKQINVMCKDDKEGPGTNESPFSVQNQIGRRKYSGRLLISALATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASVVMFHGDLPYSSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNDGFDCFFERELEILGSMKHRYLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTLGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASYIEKGLNIVGWLNFLVTENRQREIVDVQCEGIQTEGLDALLSVAIQCVSSSPEDRPTMHRVVQLLEPEVMTPCPSDFYDTD 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5992348 5999211 - MC11g0742 Mch11g0882 679816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0882 593 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Mch11g0882 593 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 588 - -
Mch11g0882 593 SUPERFAMILY L domain-like 29 192 - -
Mch11g0882 593 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Mch11g0882 593 SMART serkin_6 310 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0882 593 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Mch11g0882 593 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524(InterPro)
Mch11g0882 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0882 593 Gene3D Transferase(Phosphotransferase) domain 1 386 583 - -
Mch11g0882 593 Gene3D Phosphorylase Kinase; domain 1 287 385 - -
Mch11g0882 593 SUPERFAMILY Protein kinase-like (PK-like) 296 577 IPR011009 -
Mch11g0882 593 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 190 578 IPR050647 -
Mch11g0882 593 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Mch11g0882 593 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515(InterPro)
Mch11g0882 593 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Mch11g0882 593 Pfam Leucine Rich Repeat 123 144 IPR001611 GO:0005515(InterPro)
Mch11g0882 593 ProSiteProfiles Protein kinase domain profile. 310 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0882 593 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0920 Mch-Chr10:6509109 Mch11g0882 Mch-Chr11:5992348 5.92E-274 dispersed
Mch11g0882 Mch-Chr11:5992348 Mch6g0211 Mch-Chr6:1415611 5.02E-155 dispersed
Mch11g0882 Mch-Chr11:5992348 Mch3g1516 Mch-Chr3:17303774 1.98E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77064 PF00069 Pkinase 4.40E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0882 - - - 0.0