Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0920 ATGACGCAAGGTCTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGAGAATCTGATGAAGGAGGAGTGGGTGTCCGGGAAGTCTGGGCAAATGGGGTCTGCATAAAAACAACAGAAGTAGAAGCCAAGCTCGATGAGGGAAATATTCAAGAGGCAGAATCTTCATTGCGGGAAGGGTTGTCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAGTATCAGAGAGGAAATGTCGAAGGTGCTCTACATGTGTTTGATGGTATTGATCTCCAAGCCACCATTCAACGTTTACAGCCTTTCGCCGAGAAAACGCCTCCAAAAAAAGGACGTGCACGCCCTGAATCTCAACATGCAGTTTCACAGCATGCTGCAAACCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACAAGTGTACTTGATGCCGTAGAGAAGATATTCCAGCAAGGAATTCCCGATGCGCAAGTGGAAAGTAGGCTGCAAGAGACCGTTAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGATGCAATATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAGTAATGAATGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGTGGCTGGCCCTCCTAGTTTATTTCTTCAACTTGAAGGTTCATATTGTCCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTGCCTGGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCTTTATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTGTATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTATGTTATTGTGCAGCAGGGCAGAATAAAGTTGCCTTGAATCTTCTGAGAAAGTGTCTTCACAAACACGAGCAGCCAGATGATGTGGCAGCCTTGTTACTGGCAGCCAAGATTTGTAGTGAGGATCCTTATCTTGCTGCTGAAGGTGTTGGATATGCCCAGCGGGCAATGAACAATTCAGTAGGAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCTTGTTGGGTCTTTGTTTGGGAAAAGAAGCCAAAATGTCTTCCTCTGACTTCGAGAGGTCCCGTCTTCAATCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTTCTCTGGAGAGCAATAACTTAGATTTGATTCTTGAGTTAGGAGTACAATATTCAGAGTATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTACATTGATGAAACCGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGCGATTTTCAGAGGCTGAAGTAGTCACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGCACCACTTCTCAGACTCAAGGCAAAGCTGAAGATCTCTCAATCACTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCACAAAAGAAATCCTTTGGGCCACTCAGAATTATACCTCAGGTTGAAGATGATAAAGTGAATGAGTTTGAAGTTTGGAACGGTCTGGCAAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCTAAAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGCAAGATGCTTTGTCTAATGTGTGAAGGACGTGAGAAGGTCCGAGAAGCTCTAGCTGCTTATATCAATGCCCTCCTACTCGAACCAAGTTATGTTCCTTGCAAGGTTTTGATCGGTGCTATTTGGTCGAAAGCAGGCCCGGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCGTTGAGATTAGATCATACCAACCGCAAGGCATGGTTTTACTTGGGGACGATTCATAGGGACGAAGGACGAATGGCTGATGCTATAGACTGCTTCCAGGCAGCTGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTGTTCTCTAG 2139 44.65 MTQGLDEDDREPAMESGESDEGGVGVREVWANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALHVFDGIDLQATIQRLQPFAEKTPPKKGRARPESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFQQGIPDAQVESRLQETVSQAVELLPELWKQAGCFQDAISAYRRALLSQWNLSNECCARIQKGFAVFLLYSGVVAGPPSLFLQLEGSYCPKNNLEEAILLLMVLVKKCCLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKCLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSVGNEEHLKGVGLRLLGLCLGKEAKMSSSDFERSRLQSEALKSLEAASSLESNNLDLILELGVQYSEYRNLNAALQYAKKYIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQAPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIIPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPEVLHTEGKMLCLMCEGREKVREALAAYINALLLEPSYVPCKVLIGAIWSKAGPDALPIARSLLSDALRLDHTNRKAWFYLGTIHRDEGRMADAIDCFQAAAMLEESDPIESFSSVL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6281008 6285915 - MC11g0778 Mch11g0920 679854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0920 712 Gene3D Tetratricopeptide repeat domain 243 643 IPR011990 GO:0005515(InterPro)
Mch11g0920 712 SUPERFAMILY TPR-like 508 701 IPR011990 GO:0005515(InterPro)
Mch11g0920 712 ProSiteProfiles TPR repeat profile. 670 703 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 FunFam NPG1 553 706 - -
Mch11g0920 712 SUPERFAMILY TPR-like 195 465 IPR011990 GO:0005515(InterPro)
Mch11g0920 712 PANTHER PROTEIN NPG1 32 709 IPR043376 -
Mch11g0920 712 Gene3D Tetratricopeptide repeat domain 650 708 IPR011990 GO:0005515(InterPro)
Mch11g0920 712 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 SMART tpr_5 670 703 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 SMART tpr_5 596 633 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Mch11g0920 712 Pfam Tetratricopeptide repeat 654 697 - -
Mch11g0920 712 Pfam Tetratricopeptide repeat 40 91 - -
Mch11g0920 712 Gene3D Tetratricopeptide repeat domain 38 215 IPR011990 GO:0005515(InterPro)
Mch11g0920 712 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0920 Mch-Chr11:6281008 Mch5g0116 Mch-Chr5:733447 1.73E-180 dispersed
Mch11g0920 Mch-Chr11:6281008 Mch6g2836 Mch-Chr6:29647254 7.41E-192 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0920 K21843 - csv:101206641 1236.48