Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0971 ATGGACAGAGGTCAGGCTATAGCATTCTATGCCACGATCAGTTGCGTCGCTTTCATTGTGTCGAAGATCTTCATAGCATTGCTTCTTTACAAACGCTGGAAAAGAAGACACGTGATTTATGAAGACGGGATATCAGGTGGGACGATGGTCATGTTCAAATCTGCAGGAACAAAGTCCCTAAAATCAGATGCATTCCTCAAGAAAACACTAAAGCTGAACAACAAAGACATCATTGGCTCTGGAGGCCATGGGACAGTTTACAAACTTACACTAAGCGACTCCACGACATATGCGGTGAAAAGACTGAACCGAGGAAGTGTCGAGAGAGATCAAGGATTTGAACGAGAATTGGAAGCGATGGGCGACATAAAGCACCGGAATATCGTAACACTTCATGGATACTACACTGCCCCTCACTATAATCTCCTTATATATGAGCTAATGCCAAATGGAAGTTTGTATGCGTACCTACATGGAAGATCAAATGAGAAGATTTTGGATTGGCCATCGCGATATAAAATAGCAGTAGGTGCAGCGAGAGGCATATCGTACCTTCATCATGACTGCATCCCGCACATCATACACAGAGATATCAAGTCAAGCAACATACTTTTGGATCAAAACATGGATGCCCGAGTATCCGACTTTGGATTGGCAACACTCATGGAACCAGACAAGACTCATGTTTCAACAATTGTGGCAGGCACATTTGGATACTTGGCTCCAGAATACTTCGATACCGGGCGAGCAACGGCGAAAGGAGATGTCTACAGCTTTGGTGTAGTACTACTCGAGCTCTTAACAGGGAAAAAACCGACCGATGAAGCATTTATGGAAGAGGGAACCAAACTTGTGATGTGGGTGAAAACAGTTGTTCAGGAGAAAAGGGAAGAATATGTACTTGACAGTAGTTTGGTCTGTTGTCCGATTGACGAAGTTAATGGCGTATTCAGCATTGCAATGAAGTGTCTTGAACCAGAACCCGCTCAGCGACCGACAATGGCACAGGTTCTCAAAATGCTTGAGCAGATAAAGTTGAATCGAATTGTAACATATTCTTGA 1062 43.69 MDRGQAIAFYATISCVAFIVSKIFIALLLYKRWKRRHVIYEDGISGGTMVMFKSAGTKSLKSDAFLKKTLKLNNKDIIGSGGHGTVYKLTLSDSTTYAVKRLNRGSVERDQGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLYAYLHGRSNEKILDWPSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDARVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATAKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVMWVKTVVQEKREEYVLDSSLVCCPIDEVNGVFSIAMKCLEPEPAQRPTMAQVLKMLEQIKLNRIVTYS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6651344 6654021 - MC11g_new0173 Mch11g0971 679905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0971 353 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Mch11g0971 353 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 351 - -
Mch11g0971 353 Pfam Protein kinase domain 74 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0971 353 Gene3D Phosphorylase Kinase; domain 1 53 147 - -
Mch11g0971 353 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Mch11g0971 353 SUPERFAMILY Protein kinase-like (PK-like) 68 345 IPR011009 -
Mch11g0971 353 ProSiteProfiles Protein kinase domain profile. 72 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0971 353 Gene3D Transferase(Phosphotransferase) domain 1 148 351 - -
Mch11g0971 353 PANTHER OS01G0750732 PROTEIN 11 344 IPR050885 -
Mch11g0971 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0971 353 SMART serkin_6 72 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0971 353 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0971 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0971 Mch-Chr11:6651344 Mch6g0211 Mch-Chr6:1415611 8.83E-89 dispersed
Mch11g0971 Mch-Chr11:6651344 Mch3g1516 Mch-Chr3:17303774 2.99E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g10 . . . . . . . . . . . . . Car09g00604 . . . Bhi09g03584 . . . . Mch11g0971 . Cla11g01673 . . . . . . . . . . Lsi04g01967 Csa04g02246 . . . . . . . . . . . . Cmo09g00666 . . . . Cpe14g00338 . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77066 PF00069 Pkinase 2.00E-49 CL0016 Mch PK