Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0976 ATGGATTCCCTCCATGGATTACCTCCTCTCAAAAGGCTCAGAATTCTTCAAGAACAAGAACGAAAGCGGCAGCAAGCGGACCAATTGCTCGATTCATGCTCCCTCCCAGCAAAGAAGCGAAAGGAGTCTCGTGACTCGTCGTTCCTCTTCCCTGACGCTACATTGCCTCACAGAACCGCAATGTCTGCTTCTCCTTACTGCTTGCCGACCAAGAAAAGAGTGTGGGCGCTTCGCCCTGATTTTGCATCTGAATCGCTGGATCTCAATGTCGAATACAAGCCACATCCGGAGGAAGAATCGGTTTCGAAAGCGGCACCAGAGAGAGAGGAAAAGGAGAGTGAGAAGGGAAAAGGAAAGGGAGATGAAATTTCCGATGTTGAAACTAACCTAGAAGAAGACGAGGACGAAGACGACGGGATTCTCTGTGCGATTTGCCGGAGCACGGATGGAGATCCTTCGGATCCGATCGTGTTCTGTGATGGCTGCGATCTGATGGTTCACGCTTCGTGCTATGGAAATCCTCTGGTAAAGAGCGTACCGGAAGGCGATTGGTTCTGCAGCCAATGCTTGGCTTCTTCTTCGTCTTCCAAGACGGAGAAGAAGATTTCAGAATCTCCATTTTCTTGCTGCCTTTGTCCTCTCAAAGGTGGGGCTATGAAGCCGACGAAAGATGGCCGGTGGGCTCATATTGTCTGCGGCCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCGGATGGCCGAGAAGGAATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAATCCAGATGTTATATCTGCAAAACTTCTAGCGGCTGTGCCATTGATTGCTCTGAGCCCAAGTGCAATTTGGCTTTCCATGTTACCTGTGGGTTGGAGGAGGATCTTTGTATTGAATACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGAAACCATACTGATTTGTGGAAGAAG 969 49.12 MDSLHGLPPLKRLRILQEQERKRQQADQLLDSCSLPAKKRKESRDSSFLFPDATLPHRTAMSASPYCLPTKKRVWALRPDFASESLDLNVEYKPHPEEESVSKAAPEREEKESEKGKGKGDEISDVETNLEEDEDEDDGILCAICRSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCSQCLASSSSSKTEKKISESPFSCCLCPLKGGAMKPTKDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSRCYICKTSSGCAIDCSEPKCNLAFHVTCGLEEDLCIEYQEGRRSGAIVAGFCRNHTDLWKK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6683263 6684231 - MC11g0802 Mch11g0976 679910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0976 323 CDD ePHD 209 317 - -
Mch11g0976 323 ProSiteProfiles Extended PHD (ePHD) domain profile. 206 318 IPR034732 -
Mch11g0976 323 MobiDBLite consensus disorder prediction 19 55 - -
Mch11g0976 323 MobiDBLite consensus disorder prediction 88 135 - -
Mch11g0976 323 Pfam PHD-finger 142 189 IPR019787 -
Mch11g0976 323 Pfam PHD-zinc-finger like domain 208 305 - -
Mch11g0976 323 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Mch11g0976 323 CDD PHD_BRPF_JADE_like 141 189 - -
Mch11g0976 323 SMART PHD_3 141 190 IPR001965 -
Mch11g0976 323 SMART PHD_3 263 318 IPR001965 -
Mch11g0976 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 320 IPR013083 -
Mch11g0976 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Mch11g0976 323 SUPERFAMILY FYVE/PHD zinc finger 125 190 IPR011011 -
Mch11g0976 323 PANTHER PHD FINGER PROTEINS 90 318 IPR050701 GO:0006357(PANTHER)
Mch11g0976 323 MobiDBLite consensus disorder prediction 90 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0976 Mch-Chr11:6683263 Mch7g0211 Mch-Chr7:2573096 9.90E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42607 PF13832 zf-HC5HC2H_2 2.20E-29 CL0390 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0976 K11380 - csv:101203744 514.612