Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0985 ATGAAGCTGTTCTTGTTTAGAACTCTCCTCTTTGCTTCTGCCATTGGTTTCTTCTTCTTCTTCTTCATTGTTGGAGTTCATTCTCTGTCCACTAGATTGCCTGTTGATGAAGTGGAAGCTTTACAGGAAATAGGAGACATTTTGGGGAAAAGGGATTGGAATTTCAGTGCAGATCCTTGCAATGGAGGCCATGGATGGATTTCTCAGCCAAACCAAATCCCTAAAAATGTTTCTGATTTTCAAAATAATCTCACCTGTGATTGCACATTTCTTGATGCTACAGTCTGCCATGTCATCGCCATAGTTCTCAAATCGCAGAGCCTTCAGGGCGCTCTCCCGCCCAATCTTGTGCGGTTGCCATTTCTGCAGCAAATCGATCTCTCTCGGAACTATCTCAGCGGCAAAATTCCTCCAGAATGGGGCTCTACGAAACTCGTCAACATTTCCCTTCTTGGAAATCGGTTGACGGGTTCGATCCCAGAGGAGATTGGAAACATCACTACTCTCGAGACTTTGGTCTTAGAGATCAATCAGCTGTCTGGAAGCATTCCTCAAACGCTTGGAAATTTGCCCCAGATACAGAGACTACATCTTACCTCGAACAAGTTTTCTGGGGGGTTGCCAATGTCACTGGGAAAGCTGACCACATTGAAGGAATTTCGAATTGGTGACAACAATTTCTCGGGCCCAATACCGAATTTCATACATAATTGGACAGATCTTACTGAATTATTCATTCAGGCAAGTGGATTGAGTGGGCCCATTCCTTCTGACATTGGACTCTTGACAAAAGTATCTGACTTGAGAATCAGTGACTTGAGTGGAGCTTCGTCACCCTTTCCACCTCTTAGTAATTTGAAAAACATGACAAATCTGATATTGAGAAGTTGCAACATCACTGGAAGACTGCCCAACTATCTGGATGGGATGCCATCATTGAAAATCTTAGACCTTAGCTTTAACAAACTAAGTGGACGAATTCCAACCAGATATGATGCTCTTAAAGGTTTGGATAACATATTTTTAACTGGAAACATGCTAAACGGATCAGTGCCTGATTGGATGTTGAAAGGAAAGGGCATCGATCTTTCCTATAATAATTTTACAGTCAGGGTTGCTGGGGAAAGCTGTCGATCACAAAAAGTAAACCTGTTTGCAAGCTCATCACAAGACAATGATTATGGAATTCTTTCATGTTTAGCAGGCTCGTCTTGTTCAAAATCTTGGTACTCTCTCCATATAAATTGTGGTGGCAAGGAACAAACGATAAATGGAACTACCGTTTTTAAAGGAGATCGAAATACAGGCAGCTCTATGTTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACTGGTAGTTTTATGGATGATGGTGACTCTCAAGATGAATACTCTGCAACAAATTCTTCTACTCTGTCTATGATAAATCCTGAATTGTACATGACTGCACGGGTTTCTCCGTTATCTCTTACTTATTATGGGTTTTGCATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACATTCAGTAGTCTCGGCAGACGCATATTTGATGTTTACGTTCAGAAAAAGCTGGTGCTGGAGGATTTCAATATCGTGGATGCAGCAGGTGGCGTTGATAAAGCAGTCATAAAAAAAATCCCAGTTACCGTAACAAATGGTACATTGGAGATCCGCTTCTATTGGGCCGGGAGGGGAACAAATGCTATTCCTGTGAGGGGAGTTTATGGTCCTCTTATATCAGCTATATCAGTTGATCCTGACTTTGAGCCTCCGTCAGAGGGCGGAGAAACTGGAAAGTCTGGCGTATCTGTAGGTGCAGTTATTGGAATTGTGGCTGCTGCAGTTTTTGTTATATTATTGACCATCGGTATCCTGTGGTGGATAGTATGTCTACGACGGGAAAAGACACTTGAACAAGAGTTACGAGGTTTGGATTTGCAGACTTGTTCTTTTACATTAGGGCAAATAAAAGCCGCCACAAACAATTTTGACGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTGTTCTTGCAGACGGCACCGCTATTGCAGTAAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAGTTTGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGCTGTATTGAAGGAAATCAGCTTTTGTTAGTATATGAATACTTGGAAAACAATAACCTTGCCCGTGCCTTGTTTGGTCTAGAAGAAAGTGAACTTAATTTGGATTGGTCAACAAGGCACAAGATCTGTATTGGTGTAGCAAGAGGCTTGGCTTATCTTCATGAAGAGTCAAGACTAAAGATTGTCCACAGAGACATCAAAGCTACTAATGTTCTGTTAGACAAAGATCTAAACCCCAAGATATCCGACTTCGGCTTGGCCAAGCTTGATGAAGAAGAAAATACCCACATAAGCACTCGGATTGCTGGAACTTTTGGATATATGGCGCCAGAATATGCAATGCGAGGACACTTGACCGATAAGGCAGATGTTTACAGCTTCGGCGTTGTAGCATTGGAAATAGTTAGCGGAAGGAGCAACACTAGTTACCGGGCAGATAACGACTTCTCTTATCTTCTAGACTGGGCACTTAAGTTGAAAGAGAAGAACAGTTTAATGGAGCTAGTTGACCCAAAATTAGGCTCCAACTTCAACAAAGGAGAGGCATTGAGAATGATCAAAATCGCTCTCCACTGCACTAATGTCTCTCCTGCAGCAAGACCCAACATGTCATCAGTAGTAAGCATGTTGGAAGGCAAGCAGGCTGTCGAGGACATAGTTTCGGGTCCGGGCATCTCTGAGGAAGCAAGAAATGCAGCATGGACTCATTTGCTTGCTGATATTCCAACAACAGGTTCCTCAACATCTGTGAGCGATCTTTATCCAATCAATGTGTCCCAGTACTTGGATACTAGAAACTAG 3009 42.37 MKLFLFRTLLFASAIGFFFFFFIVGVHSLSTRLPVDEVEALQEIGDILGKRDWNFSADPCNGGHGWISQPNQIPKNVSDFQNNLTCDCTFLDATVCHVIAIVLKSQSLQGALPPNLVRLPFLQQIDLSRNYLSGKIPPEWGSTKLVNISLLGNRLTGSIPEEIGNITTLETLVLEINQLSGSIPQTLGNLPQIQRLHLTSNKFSGGLPMSLGKLTTLKEFRIGDNNFSGPIPNFIHNWTDLTELFIQASGLSGPIPSDIGLLTKVSDLRISDLSGASSPFPPLSNLKNMTNLILRSCNITGRLPNYLDGMPSLKILDLSFNKLSGRIPTRYDALKGLDNIFLTGNMLNGSVPDWMLKGKGIDLSYNNFTVRVAGESCRSQKVNLFASSSQDNDYGILSCLAGSSCSKSWYSLHINCGGKEQTINGTTVFKGDRNTGSSMFFVTGTNWAISNTGSFMDDGDSQDEYSATNSSTLSMINPELYMTARVSPLSLTYYGFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRIFDVYVQKKLVLEDFNIVDAAGGVDKAVIKKIPVTVTNGTLEIRFYWAGRGTNAIPVRGVYGPLISAISVDPDFEPPSEGGETGKSGVSVGAVIGIVAAAVFVILLTIGILWWIVCLRREKTLEQELRGLDLQTCSFTLGQIKAATNNFDAANKIGEGGFGPVYKGVLADGTAIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYLENNNLARALFGLEESELNLDWSTRHKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTSYRADNDFSYLLDWALKLKEKNSLMELVDPKLGSNFNKGEALRMIKIALHCTNVSPAARPNMSSVVSMLEGKQAVEDIVSGPGISEEARNAAWTHLLADIPTTGSSTSVSDLYPINVSQYLDTRN 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6756616 6766679 - MC11g_new0178 Mch11g0985 679919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0985 1002 Pfam Protein tyrosine and serine/threonine kinase 678 946 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0985 1002 Pfam Malectin domain 411 594 IPR021720 -
Mch11g0985 1002 Pfam Leucine Rich Repeat 122 141 IPR001611 GO:0005515(InterPro)
Mch11g0985 1002 Pfam Leucine Rich Repeat 312 329 IPR001611 GO:0005515(InterPro)
Mch11g0985 1002 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Mch11g0985 1002 CDD STKc_IRAK 681 948 - -
Mch11g0985 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0985 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 956 IPR051824 -
Mch11g0985 1002 Gene3D Ribonuclease Inhibitor 66 207 IPR032675 -
Mch11g0985 1002 Gene3D Ribonuclease Inhibitor 208 270 IPR032675 -
Mch11g0985 1002 Gene3D Transferase(Phosphotransferase) domain 1 751 957 - -
Mch11g0985 1002 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 644 750 - -
Mch11g0985 1002 Gene3D Phosphorylase Kinase; domain 1 640 750 - -
Mch11g0985 1002 Gene3D Ribonuclease Inhibitor 271 384 IPR032675 -
Mch11g0985 1002 Gene3D - 409 598 - -
Mch11g0985 1002 ProSiteProfiles Protein kinase domain profile. 675 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0985 1002 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 599 - -
Mch11g0985 1002 SMART serkin_6 675 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0985 1002 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 34 274 - -
Mch11g0985 1002 SUPERFAMILY L domain-like 81 355 - -
Mch11g0985 1002 SUPERFAMILY Protein kinase-like (PK-like) 661 949 IPR011009 -
Mch11g0985 1002 FunFam Putative LRR receptor-like serine/threonine-protein kinase 751 957 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0985 Mch-Chr11:6756616 Mch11g0990 Mch-Chr11:6833388 0 dispersed
Mch11g0985 Mch-Chr11:6756616 Mch11g0986 Mch-Chr11:6769180 4.09E-23 tandem
Mch10g1519 Mch-Chr10:15130770 Mch11g0985 Mch-Chr11:6756616 7.15E-48 transposed
Mch3g0305 Mch-Chr3:4410641 Mch11g0985 Mch-Chr11:6756616 5.58E-51 transposed
Mch6g2725 Mch-Chr6:28863433 Mch11g0985 Mch-Chr11:6756616 2.82E-50 transposed
Mch10g1037 Mch-Chr10:7533418 Mch11g0985 Mch-Chr11:6756616 9.25E-285 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77067 PF07714 PK_Tyr_Ser-Thr 6.10E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0985 - - - 0.0