Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0988 ATGACATCCTTGAAACTCTTAGACCTCAGCTTTAACAGAATAAGTGGGCAGATTCCTTCCGGGTTTCATTCTCTTAAAAGAGCAGATAACATATTTTTAACCGGAAACTTGCTAAATGGTTCGGTGCCTGAATGGATGCTAAATGGAGGAAAAAGCATTGATCTCTCTTACAATAAATTTACATCCCCATCTAGAGGCTGTCAATCTCGAACTGCAAACCTGTTTGCAAGCTCTGCAGTGGACAGTAATTCTAACCTTGTTTCTTGTTTGGCGGACCTCCGTTGTCCCAAGAATCTATACAGTCTTCATATAAATTGTGGTGGGAAAGAAGAAATCATTAATCCTACGAAGTTTGAAGGAGATGAAGATCCAGGCAAGCCATCGGTGTTTGTCTCAAGTAAAACAAATTGGGCACTCAGCAACACTGGTATATTTTTAAATGATAATCGCATTCCAAAAGACTATCTTGAACTGAGTTCATCGAAGCTTCCTATGGTAGATTCCAAACTGTACGAGACTGCTCGAATTTCTCCATTGTCTCTTACATATTATGTGTATTGTATGGGGAATGGAAATTACTCAGTAAGCCTCCATTTTGCTGAAATTGCATTTAGAAATGACAACAAATTTAGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGGAGGCTGGTGCTGAAGGATTTTAATATTGTAGATGCTGCAGGTGGTGTCGGTATACCTATCACAAAAAGGATTCCCATTGGTGTTACAAATCATACCATAGAGATTCAATTTTATTGGGCTGGAAAGGGGACAGATGGTATCCCTGTGGGTGGAATCTATGGTCCTCTGATATCAGCCATTTCGATAGAATCTGAATTTAAGCCTCAAAAAGATCAAAGTGCCTTGCCAATAGGTGCAGTACTTCGAATTGTGGCTCCAGTCATCCTTGTTATAGTTTTGGTTCTTGGAATTCTGTGGTGGAGAGGTTGCCTTGGACAGAAAAGTACGCGTCGTCGAGATCTCAAAGGTTTAAATCTGAAAACTGGTTCGTTCACATTAAGGCAAATCAAAGCTGCCACAAATAACTTTGATGCTTCCAATAAGATTGGTGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTCTTGGATGGCACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATTCATGAGTTTGTTAACGAGATAGGCATGATATCTGCTTTGCATCACCCGCATCTAGTTAAACTTTATGGATGTTGCACCGAAGAAAATCAACTTTTATTAGTATATGAATACCTGGAAAACAATAGCCTTGCTCGGGCTATGTTCGGACCTGAAGAAACTCAACTGAAATTAGATTGGCCAACAAGGCAGAAAATCTGTATTGGTATTGCCAAAGGTTTGGCATATCTTCATGAGGAATCAAGACTGAAGATTGTTCACAGAGATATCAAAGCGACAAATGTATTGTTGGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTGGCCAAGCTTGAAGAAGAAGGAATTACCCACATAAGCACTCGGATTGCTGGAACTTTTGGATATATTGCGCCGGAGTATGCAATGCAAGGCCGCTTAAGTGATAAAGCAGATGTCTATAGTTTTGGCATTGTGGCGTTGGAAATAGTGAGCGGAAGGAGCAACACTAGTCACCAATTAAAGGATGGTTGCTTTTATCTGCTTGATTGGACGCTCGAGTTAAAAGAGAAAGGCAGTTTAATAGAGCTGGTAGATCCAAGGTTAGACTCCAACTTTAACCAGAGAGAGGCGATGGCCATGATCAATATTGCTCTCCACTGCACCAATGTGTCTCCTTCAGAAAGGCCTGCCATGTCTTCAGTGGTGAGCATGCTGGAGGGAGAAGTTGCTGTGAGGGAGGAGTTGGTTTCACATCCAAATGACACAAGAACACAGATGAGTGCAATGTGGAACCTTTTGTTGCAGAAGAGCCAGAAACAAACTGACGGTGTGAACCAGACAGAGGTACGGTTAGAAGATAGTGTACGGAGTCGGGCACAAAGCGAGCATCAACGACCCAAAGAAGCCTTGTTCTCTGGTTGA 2100 41.57 MTSLKLLDLSFNRISGQIPSGFHSLKRADNIFLTGNLLNGSVPEWMLNGGKSIDLSYNKFTSPSRGCQSRTANLFASSAVDSNSNLVSCLADLRCPKNLYSLHINCGGKEEIINPTKFEGDEDPGKPSVFVSSKTNWALSNTGIFLNDNRIPKDYLELSSSKLPMVDSKLYETARISPLSLTYYVYCMGNGNYSVSLHFAEIAFRNDNKFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGVGIPITKRIPIGVTNHTIEIQFYWAGKGTDGIPVGGIYGPLISAISIESEFKPQKDQSALPIGAVLRIVAPVILVIVLVLGILWWRGCLGQKSTRRRDLKGLNLKTGSFTLRQIKAATNNFDASNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVKLYGCCTEENQLLLVYEYLENNSLARAMFGPEETQLKLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGITHISTRIAGTFGYIAPEYAMQGRLSDKADVYSFGIVALEIVSGRSNTSHQLKDGCFYLLDWTLELKEKGSLIELVDPRLDSNFNQREAMAMINIALHCTNVSPSERPAMSSVVSMLEGEVAVREELVSHPNDTRTQMSAMWNLLLQKSQKQTDGVNQTEVRLEDSVRSRAQSEHQRPKEALFSG 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6806011 6815821 - MC11g_new0180 Mch11g0988 679922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0988 699 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 329 435 - -
Mch11g0988 699 Pfam Protein tyrosine and serine/threonine kinase 363 631 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0988 699 ProSiteProfiles Protein kinase domain profile. 360 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0988 699 SUPERFAMILY L domain-like 1 112 - -
Mch11g0988 699 FunFam Putative LRR receptor-like serine/threonine-protein kinase 436 643 - -
Mch11g0988 699 Pfam Malectin domain 101 284 IPR021720 -
Mch11g0988 699 Gene3D Phosphorylase Kinase; domain 1 328 435 - -
Mch11g0988 699 MobiDBLite consensus disorder prediction 675 691 - -
Mch11g0988 699 SMART serkin_6 360 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0988 699 Pfam Leucine Rich Repeat 3 25 IPR001611 GO:0005515(InterPro)
Mch11g0988 699 MobiDBLite consensus disorder prediction 667 699 - -
Mch11g0988 699 Gene3D Transferase(Phosphotransferase) domain 1 436 657 - -
Mch11g0988 699 Gene3D Ribonuclease Inhibitor 1 97 IPR032675 -
Mch11g0988 699 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 99 289 - -
Mch11g0988 699 Gene3D - 98 289 - -
Mch11g0988 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0988 699 SUPERFAMILY Protein kinase-like (PK-like) 344 632 IPR011009 -
Mch11g0988 699 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 642 IPR051824 -
Mch11g0988 699 CDD STKc_IRAK 366 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0986 Mch-Chr11:6769180 Mch11g0988 Mch-Chr11:6806011 5.34E-30 dispersed
Mch11g0988 Mch-Chr11:6806011 Mch11g0990 Mch-Chr11:6833388 6.58E-303 dispersed
Mch11g0987 Mch-Chr11:6778675 Mch11g0988 Mch-Chr11:6806011 6.03e-313 tandem
Mch11g0988 Mch-Chr11:6806011 Mch11g0989 Mch-Chr11:6820649 8.11E-308 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77069 PF07714 PK_Tyr_Ser-Thr 2.90E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0988 - - - 0.0