Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0989 ATGGTAGATTCCAAACTGTATGAGACTGCTCGTATTTCTCCAATGACTCTTACGTATTATGTGTATTGTATGGGGAACGGGAACTACACTATAAGCCTCCATTTTGCCGAAATTACAATAACAAATGATCAAACGTTTAACAGCCTTGGAAGACGCATTTTTGATATTTATGTGCAGGGGAGGCTGGTGCTGAAGGATTTTAATATTGTAGATGCTGCAGGTGGTGCTGGTAAACCTGTCACAAAGAAGATTTCCATTCCTGTTACTAGTAATACCATCGATATCCGGTTTTATTGGGCTGGGAAGGGCACATTTTCTATCCTTTACGGTGGAGTCTATGGTCCTCTAATATCAGCCATTTCGCTAGAGCCTGACTTTGATCCTCCATCAGAAGGTCGAAGTGCCTTACCAGTAGGTGCAATACTTGGAATTGTAGCTGCAATCGTCCTTGGTATAGTTTCAGTTCTTGGAATTCTATGGTGGAGATGTTGTCTTGGATGGAAAAGTACACTTCATCACGATTTAAAGGGTCTAGATTTGCAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACTAATAACTTTGACGATTCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTTTCCTCTTGGATGGCACCATGATTGCAGTGAAGCAACTTTCCCCCAAGTCAAGGCAAGGAATGCACGAGTTTGTGAATGAAATAGGAATGATATCTGCTTTGCACCACCCAAATCTAGTTAAACTTTATGGTTGTTGCATTGAAGGGAATCAACTTCTGCTCGTGTATGAATATATGGAAAATAATTGCCTTGCTCGAGCTATGTTTGGACCAGAAGACACGCAATTGAGATTAGATTGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGCTTGGCTTATCTTCATGAGGAATCAAGATTGAAGATCGTCCACAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCGACCCCAAGATATCCGACTTTGGTCTGGCCAAGCTTGAAGAAGAAGGAGAAACCCACATAAGTACTCAAGTTGCTGGAACTTTTGGATATATTGCACCAGAGTATGCAACGCGAGGCCACTTGAGTGATAAAGCAGATGTTTATAGTTTTGGCATTGTGGCATTGGAAATAGTGAGCGGAAGGAGCAACACTAGTCACCGATCAAAGGATGATTGCTTTTATCTGCTTGATTGGGCGCTTGAGTTAAAAGAGAAAGACAGTTTAATAGAGCTGGTAGATCCAAGGTTAGGCTCCAACTTTAACCATAGAGTGGCGATGGCCATGATCAATATTGCTCTCCACTGCACCAATGTGTCTCCTTCAGAAAGGCCTGCCATGTCCTCGGTGGTGAGCATGCTGGAGGGAAAAGTTGCTGTGAAGGAGTTGGTTTCACATCCAAATGACACAAGAACAGAGATGAGTGCAATGTGGACCCTTTTGTTGCAGCAGAGCCAGAAACAAAATGACAATGAGAACCAGACAGAGGTTATCTGTATGGACATGCCATCTAACAATTCTTCAATAAAATGA 1575 41.78 MVDSKLYETARISPMTLTYYVYCMGNGNYTISLHFAEITITNDQTFNSLGRRIFDIYVQGRLVLKDFNIVDAAGGAGKPVTKKISIPVTSNTIDIRFYWAGKGTFSILYGGVYGPLISAISLEPDFDPPSEGRSALPVGAILGIVAAIVLGIVSVLGILWWRCCLGWKSTLHHDLKGLDLQTGSFTLRQIKAATNNFDDSNKIGEGGFGPVYKGFLLDGTMIAVKQLSPKSRQGMHEFVNEIGMISALHHPNLVKLYGCCIEGNQLLLVYEYMENNCLARAMFGPEDTQLRLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLDPKISDFGLAKLEEEGETHISTQVAGTFGYIAPEYATRGHLSDKADVYSFGIVALEIVSGRSNTSHRSKDDCFYLLDWALELKEKDSLIELVDPRLGSNFNHRVAMAMINIALHCTNVSPSERPAMSSVVSMLEGKVAVKELVSHPNDTRTEMSAMWTLLLQQSQKQNDNENQTEVICMDMPSNNSSIK 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6820649 6825325 - MC11g_new0181 Mch11g0989 679923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0989 524 Gene3D - 1 124 - -
Mch11g0989 524 Gene3D Phosphorylase Kinase; domain 1 167 272 - -
Mch11g0989 524 SMART serkin_6 197 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0989 524 ProSiteProfiles Protein kinase domain profile. 197 478 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0989 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0989 524 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 479 IPR051824 -
Mch11g0989 524 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 166 272 - -
Mch11g0989 524 FunFam Putative LRR receptor-like serine/threonine-protein kinase 273 480 - -
Mch11g0989 524 Gene3D Transferase(Phosphotransferase) domain 1 273 510 - -
Mch11g0989 524 SUPERFAMILY Protein kinase-like (PK-like) 181 494 IPR011009 -
Mch11g0989 524 Pfam Protein tyrosine and serine/threonine kinase 201 468 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0989 524 Pfam Malectin domain 2 120 IPR021720 -
Mch11g0989 524 CDD STKc_IRAK 203 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0989 Mch-Chr11:6820649 Mch4g0077 Mch-Chr4:524273 8.63E-216 dispersed
Mch11g0988 Mch-Chr11:6806011 Mch11g0989 Mch-Chr11:6820649 8.11E-308 tandem
Mch11g0989 Mch-Chr11:6820649 Mch11g0990 Mch-Chr11:6833388 1.66E-269 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77070 PF07714 PK_Tyr_Ser-Thr 4.90E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0989 - - - 0.0