Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1016 ATGTCGCATTCTGGTGGAAACCCCATTTCGGACCTTCGTTTCCACGATCTCTCCGATCGATTCCGCGACTCGGTGAGTTGTGAAGCCAACAAACCCGACTTCCGAGAGCTAGATCTGGGTTCTCCGGTTTCGCCATTGCGGGTTCGTCACAGTGGTGGCGGCGCCGGCGGTCCCGCCGTGAGCAGTAGTTCCAGTTCATCCGGATCGGTTTCCGGTCGGAATGGGCCCAACCCAGCGGCGAAGAGATCCGATTCGGGTCCTAATAATCACTCCGGCGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCCGCCGAGAGCCTCCGATCCTCCGGAACCCCTAGAAATTTCAAGTCGGGTCATAATAGATCCGATTCCGCCTCCAATCATCCGCTAATCTACTCGGGTCAAAGCTCCGTTACTTCCCCATCCAACGTTCTCCCCACCGGCAATATCTGCCCCTCCGGAAGGATCTTGAAGACGAGCATGCCCTCGAATCGGAGCTCCAGAACCGACGTTTTGGGTTCCGGGTCGGGGAATTACGGCCACGGAAGCATAATGCGGGGCCTCGCCACCGCCAAAACTTCCATCGCCGTTGAATCAGTCAGTAATGTTAGTGCACGGGCCGGTGGTTTCGGCAGTGGTGGTGGAGAATCATTGAACAGGGCGAAACAGAGTGGGAATCCAGAGGAGTTGAAGAGAGCAGGAAACGAACAGTACAAAAAGGGGCATTTCGCTGAGGCTTTGAGTCTCTATGATCGAGCCATTGCCCTCTCTCCGGCCAATGCCGCTTACCGGAGCAACCGAGCAGCCGCCCTCACCGGCCTGGGGCGGCTCAGGGAGGCCGTAAACGAGTGTGATGAGGCGGTGAGATTGGATCCCAATTATGTGAGGGCCCATCAACGTTTGGCATCTCTGTTTCGTAGGTTAGGGCAGGTGGAGAATGCCAGGAAACACCTTTGTTTTCCGGGTGTTCAGCCAGATACATCCGAGCTGCAGAGGTTGCAGGTAATAGAGAGGCATATAAGTCGATGTGGGGATGCCCGTCGAGTCGGAGATTGGATAAGTGCATTAAAGGAGGCAGATGCTGCAATTTCTGGTGGAGCCGATTCTTCACCTCAGGCAAGAAGCTTGGAAGCACTTTTGAAGCTTCATCAGATTGAAGATGCTGAATCCAGTCTATTTAGCATTCCAAAGTTACATCCATCAACCAATGCGTCCTCACAAACGAAGTTTTTCGGAATGCTTTCGGAAGCTTACTCTTACTTCATCCACGCTCAAATTGAGATGGCGTTAGGAAGGTTTGAGAATGCAGTTACATCTGCTGAGAAAGCTGGGCAGATTGATCCCCGAAATGTAGAAGTGGCAATGCTGCTTAATAACGTGCGCTTGGTCGCTAGAACTCGTACCCGTGGCAATGATCTCTTTAAATCAGAAAGGTACACAGAAGCCTGCTCAGCATACGGGGAAGGTCTAAAGCTTGACCCTTCAAACTCGGTTCTCTATTGCAACCGGGCAGCCTGTTGGTTTAAACTTGGAATGTGGGAGCGATCCATCGAAGATTGTAATCAAGCATTACTTATCCAACCAACTTACACGAAAGCCCTTCTTCGAAGGGCTGCCTCAAATAGTAAGCTCGAAAGATGGGAAGAGGCTGTAAGAGACTATGAAGTTTTAAGGATGGAGCTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTCCATGCTCAAGTTGCATTAAAGAAATCCCGTGGAGAAGAAGTTCATAATTTGAAGTTCGGTGGTGAAGTCGAGGAAGTGTCGAACCTAGACCAGTTTAGAGCTGCCATATCGTTCCCAGGCGTCACCGTGGTTCATTTCAAAACAGCATCTGATGTGCAATGCAAGCAAATATCGCCATTCGTGGACACCCTTTGTCGTCGCTACCCTTCCATCAATTTCCTCAAGGTGAATCTAGAAGAAAGTCCAGCAATTGCAGACACTGAAAACGTAAGGATTGTACCAACATTCAAGATTTACAAAAGCGGAAATCGAGTGAAAGAGATCATATCTCCAACTCGCGACATGCTGGAGCATTCAGTGAGGTATTATAGCTTATAG 2100 50.43 MSHSGGNPISDLRFHDLSDRFRDSVSCEANKPDFRELDLGSPVSPLRVRHSGGGAGGPAVSSSSSSSGSVSGRNGPNPAAKRSDSGPNNHSGELSGSSESSPTAAESLRSSGTPRNFKSGHNRSDSASNHPLIYSGQSSVTSPSNVLPTGNICPSGRILKTSMPSNRSSRTDVLGSGSGNYGHGSIMRGLATAKTSIAVESVSNVSARAGGFGSGGGESLNRAKQSGNPEELKRAGNEQYKKGHFAEALSLYDRAIALSPANAAYRSNRAAALTGLGRLREAVNECDEAVRLDPNYVRAHQRLASLFRRLGQVENARKHLCFPGVQPDTSELQRLQVIERHISRCGDARRVGDWISALKEADAAISGGADSSPQARSLEALLKLHQIEDAESSLFSIPKLHPSTNASSQTKFFGMLSEAYSYFIHAQIEMALGRFENAVTSAEKAGQIDPRNVEVAMLLNNVRLVARTRTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKLERWEEAVRDYEVLRMELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSNLDQFRAAISFPGVTVVHFKTASDVQCKQISPFVDTLCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHSVRYYSL 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7040334 7047236 - MC11g0832 Mch11g1016 679950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1016 699 Gene3D Tetratricopeptide repeat domain 228 585 IPR011990 GO:0005515(InterPro)
Mch11g1016 699 MobiDBLite consensus disorder prediction 208 234 - -
Mch11g1016 699 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 29 691 IPR044534 GO:0005737(PANTHER)
Mch11g1016 699 FunFam TPR repeat-containing thioredoxin TTL4 591 698 - -
Mch11g1016 699 SMART tpr_5 533 566 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 SMART tpr_5 263 296 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 SMART tpr_5 229 262 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 SMART tpr_5 499 532 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 SMART tpr_5 465 498 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 SMART tpr_5 419 452 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 Gene3D Glutaredoxin 591 697 - -
Mch11g1016 699 MobiDBLite consensus disorder prediction 27 177 - -
Mch11g1016 699 Pfam Thioredoxin 604 687 IPR013766 -
Mch11g1016 699 Pfam Tetratricopeptide repeat 420 451 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 Pfam Tetratricopeptide repeat 501 532 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 Pfam Tetratricopeptide repeat 235 296 - -
Mch11g1016 699 CDD TRX_family 604 683 - -
Mch11g1016 699 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 ProSiteProfiles TPR repeat profile. 229 262 IPR019734 GO:0005515(InterPro)
Mch11g1016 699 MobiDBLite consensus disorder prediction 57 177 - -
Mch11g1016 699 SUPERFAMILY TPR-like 228 455 IPR011990 GO:0005515(InterPro)
Mch11g1016 699 SUPERFAMILY Thioredoxin-like 502 691 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0789 Mch-Chr11:5317706 Mch11g1016 Mch-Chr11:7040334 1.29E-112 dispersed
Mch11g1016 Mch-Chr11:7040334 Mch4g0115 Mch-Chr4:734712 1.37E-220 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38