Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1030 ATGTGCCTCTCATTCTCAGAAAAGATGGGAAAGCTTCCCTTTCTGTTTGCTTTCTTTTTTGCTCTAGTAGTTTCTGGAAAGCATGAAACCGAAAGAAGCACGAGGTCAACAATGGGGCATAGTGGAAAGGGCAGAATAGGGGCCATGGTAGATAAGAGTTCCAGGATTGGCAAGGAAGAGATTTTAGCTATGCAGATGGCAATAGACGACATTAACTCCATCAGCAATCGAAGTTTCAGTCTTGTCATTAGAGACTTCAAAAGTGATCCCAATCAGGCAGCTCTTGCAGCTAAGGATCTCATCAGCATTCAACAAGTTGAGGTTCTTATAGGACCACAAACCTGGGAAGCGGCATCTGTAGTTGCTGGGGTTGGAAGCGAGAATCAAATTCCAGTTCTGGCGTTAGCTAATGAAATACCAAAGTGGGCAAATGAGAGGTTCAAATTTTTGGTCCAAGCTTCTCCCTCCCAGCTTAATCAAATGAAGGCCATAGCTGCTATTATAGGTTCGTGGAATTGGCATCTGGTCAATGTTATATATGAAGATAGAGATTCATCGACCAGTGGAATTTTTCCTCACCTTGTGCATGCGCTCAAAGATGTAGGGGCTGAAATAAGTGAATTTGTTGGTCTCCCACATTTTGACTCTGATTCATTGTCCGAAGAACTAGAGAGGCTAAGAAGAGGGTCAAGTAGAATTTTTGTAGTTCATATGTCTTTAAATTTGTCTCTGCATCTATTTGAGATAGCAAAGGAATTGGGAATGATGGGAAAGGACTATGTTTGGATCACTACTGATTCTTTCACAAACCTTGCACATTCTTTCAATGTTTCCATCAACTCTTTACTACAAGGAGTCGTTGGAGTGAAGAGCTACTTCCCAAATAATCCTCGGTTTCATGATTTTTATCGGCAGTTCTCTGGAAGGTTTAGATCAGAGTATTCTGATGAGGACAACCATGAGCCTAGTATTTTTGCGGTACAGGCTTATGATGCTGCAAAAACAGCAGCTATGGCAATGAGTGAAACCCAAGAAAGGAGTAATCACTTGTTGGAAAAAATCAAGCTCACTGATTTTCAAGGACTGAGTGGAAAGATTCAGTTTAAGGACAGAAGACTAACCCCAGCCGATATTTTTCAGATCATTAATGTGATGGGGAGGAGTTATAGGGAACTGGGCTTTTGGTCTGAAAAATTAGGCTTCTCACAGTCACGGGTGTTGGGGCAAATTTCGTCTGCTAGCTTGTTGGTGAAGAATCTTGGCCCAGTGTTTTGGCCAGGTGGATCTACGGCTACTCCAAGAGGATGGGCCATACCAACAGATTCCAACTCATTGAGAATTGGCGTGCCAACTAATTGCATGTTCAAACAGTATGTAAATGTGGAAGGAGATCAGACAGGAAACAATTTATCCTTCACTGGACTTGCAATAGATCTGTTTACAGCAACCTTAGATGATCTGCATTTCCATCTGCCGCACAAATTCTATGCTTTCAATGGAACGTATGATGATTTAGTAAAGGAAATCTACTTGAAGAAATATGATGCAGCAGTCGGTGACATAGCAATAATAACACGACGCTATGAACACGCAGAATTTACACATCCCTATTCTGAAGCAGGACTAGTGATGATAGTTCCTACCAGAAAAGACACAAGTAATAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTTCAGTTGCTGTGGTAACTGTCTACAATGGCTTTGTTGTCTGGTTCATCGAACGAAATCACTGTCCCGAACATGAAGGGTCGATGTTTAATCAAGCTGGAACCTTAGTTTGCCTATCCTTCACCACTCTCTTCTCCTTAAATGGTAATAGGCTGCACAGTAACTTGTCGCGGATTACTATGGTGGCTTGGCTATTTATGGCACTTGTGGTAACCCAGACATACACAGCCAATCTTGCCAGCATGCTCACCATTCAAAAGCTTGAACCAACCGTATGGAATATCGAGACCCTCCAAAGAGCAAATGCATTTGTTGGATATGCCAAAGGATCCTTTGTTAAAAGATATTTGGAGGAAGTTTTAGACTTCCGTTCTGAAAACATAAAAGAATGCTCTACCCCAGATGGGTTAATTGAAGCTCTCAGAAACCAGAAGATAGCAGCTGCTTTTCTTGAAGTTCCTTTTGCAAAACTACTCCTTGCAAGATTTTGCAAGGAGTTTATGATTTCTTGGCCAGCCTACAAAGTCGGAGGATTTGGATTTGCATTCCCGAGGGGCTCGCCGCTGTTACCGCATGTTAACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTTTAGACAGTTGGAGGACGGCATGATTGCTAATGAGAAATGTGTGGATGGGGAAGTAAAAGATGAAAGTTCAAGTCTCGGCCCCAACAGCTTCTTTTTACTATTTGTAATAAGTGGAGGAGTTTCAACAATCGCACTCACATTGTACATTATTAATGCTCATAAATCTTGTCTTCAGCAAAACGCTATTTGGAGATTAATGTTGGTTGTAATGAAACACTGGAGAAATCACAGGAGGGGACTTTCTCGGCGGGTCAGCGACGTGCCACAAACCGTCCCTAACAACTCTCAAAATGCTACGAACTTGCAAATTCAGGTCTAG 2640 42.05 MCLSFSEKMGKLPFLFAFFFALVVSGKHETERSTRSTMGHSGKGRIGAMVDKSSRIGKEEILAMQMAIDDINSISNRSFSLVIRDFKSDPNQAALAAKDLISIQQVEVLIGPQTWEAASVVAGVGSENQIPVLALANEIPKWANERFKFLVQASPSQLNQMKAIAAIIGSWNWHLVNVIYEDRDSSTSGIFPHLVHALKDVGAEISEFVGLPHFDSDSLSEELERLRRGSSRIFVVHMSLNLSLHLFEIAKELGMMGKDYVWITTDSFTNLAHSFNVSINSLLQGVVGVKSYFPNNPRFHDFYRQFSGRFRSEYSDEDNHEPSIFAVQAYDAAKTAAMAMSETQERSNHLLEKIKLTDFQGLSGKIQFKDRRLTPADIFQIINVMGRSYRELGFWSEKLGFSQSRVLGQISSASLLVKNLGPVFWPGGSTATPRGWAIPTDSNSLRIGVPTNCMFKQYVNVEGDQTGNNLSFTGLAIDLFTATLDDLHFHLPHKFYAFNGTYDDLVKEIYLKKYDAAVGDIAIITRRYEHAEFTHPYSEAGLVMIVPTRKDTSNKALLFTKPFTVTMWISVAVVTVYNGFVVWFIERNHCPEHEGSMFNQAGTLVCLSFTTLFSLNGNRLHSNLSRITMVAWLFMALVVTQTYTANLASMLTIQKLEPTVWNIETLQRANAFVGYAKGSFVKRYLEEVLDFRSENIKECSTPDGLIEALRNQKIAAAFLEVPFAKLLLARFCKEFMISWPAYKVGGFGFAFPRGSPLLPHVNEALLKVSETGKFRQLEDGMIANEKCVDGEVKDESSSLGPNSFFLLFVISGGVSTIALTLYIINAHKSCLQQNAIWRLMLVVMKHWRNHRRGLSRRVSDVPQTVPNNSQNATNLQIQV 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7178746 7183142 + MC11g_new0189 Mch11g1030 679964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1030 879 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 831 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch11g1030 879 FunFam Glutamate receptor 556 694 - -
Mch11g1030 879 Pfam Bacterial extracellular solute-binding proteins, family 3 469 564 IPR001638 -
Mch11g1030 879 SUPERFAMILY Periplasmic binding protein-like I 41 437 IPR028082 -
Mch11g1030 879 Gene3D - 53 374 - -
Mch11g1030 879 FunFam Glutamate receptor 160 320 - -
Mch11g1030 879 FunFam Glutamate receptor 440 555 - -
Mch11g1030 879 Pfam Receptor family ligand binding region 62 384 IPR001828 -
Mch11g1030 879 Gene3D - 156 397 - -
Mch11g1030 879 CDD GluR_Plant 445 782 - -
Mch11g1030 879 SMART GluR_14 446 784 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch11g1030 879 PIRSF IGluLR_plant 7 874 IPR017103 -
Mch11g1030 879 Gene3D - 654 745 - -
Mch11g1030 879 Gene3D - 440 568 - -
Mch11g1030 879 SUPERFAMILY Periplasmic binding protein-like II 421 779 - -
Mch11g1030 879 CDD PBP1_GABAb_receptor_plant 45 405 IPR044440 -
Mch11g1030 879 Pfam Ligand-gated ion channel 780 812 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch11g1030 879 Gene3D - 746 777 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1030 Mch-Chr11:7178746 Mch8g0685 Mch-Chr8:4900208 1.60E-132 dispersed
Mch11g1029 Mch-Chr11:7171436 Mch11g1030 Mch-Chr11:7178746 0 tandem
Mch11g1030 Mch-Chr11:7178746 Mch11g1031 Mch-Chr11:7184295 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .