Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1051 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCTGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCCATCAAAGTTATTGATTTGGAAGAATCCGAGGACGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAGTTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATTTGCTGCAGTCTGGTCCACCGCTCGATGAAATGTCAATTGCATGCATTCTACGTGATTTGCTGCATGCAATTGATTATTTGCATTGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAATATATTGCTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACGAGGACAATATCAAGACGAAAGACATTTGTGGGAACTCCATTCTGGATGGCACCGGAGGTAATTCAAAATTCTGAAGGATACAATGAGAAGGCAGATATCTGGTCTCTAGGAATCACTGCTATTGAGATGGCGAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATTATACCTCGAGAAAATCCACCTCAGTTGGATGAGCATTTTTCTCGCCCCATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGCTTCATTAGGAATGCCAGGAAGAGTCCTAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAATACCAAATTCCAAAGGATGAAGATGAAGAAACACCAACTAATGGTACTAGAGCAATAGGCGAAACGTCCGACACGGTAAAAGTATCGAGAAATACAAGAGAAGAAACTATTCATGCCAGCAACCAGAGTAAAACTCCTAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCAAACAGTACGGGTACTGTTCGAAGTGTGGTAAAACCGCCTCAAATTAGGGAAAGAAAGCCAGACATTCCTTATGGTCAGGCTGCACCAAGCAGAATTCCAGAGAGTGGCAACTGGCTAGCTGCATCTGGAAATGCATCACGTGACGTAGCAGAAGATGCTAGAGATTCATACAATACGGGGGATGCGAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTATCGTGATCCGGTCTCCCAAGGGATCTCAATCATCTGCTCAATTTCATAGTCAAAGCAGTCCGTCTGGAAATGCACAAACATATTTTGAGGACACACCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGATTCTCCTCGGACTCCACTATCCAGATCGGGAATTCAAGAAAGGACTTCAAGTTTTTCCCCTGAAGATAGTGCAGTAAACCTCTCGGAGGCAAAGGCTGCGATTCAAGCAGGATTGAAAAAAGCTAATGCAAGGGAAAGATCAGCACATAAACTCAACGACAGGAAGGAAAATAGAAGGACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCGTGAATTCTTTGATGCACCAAGAGCATTGCCAAAGCCATCTCAATCAATTCATGATGATGAAAGTGCAAAAGTAGCATTATCTTCTGCACCTTTATCGAAATTGTTTATGCCATCCTTGAAAGAGGTAGTTGCTGATGACTCAGAAGGATCACCTGCTCGTGCTGTAATTAATGCACTTATAAATATGGAACACGTAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTTCTACAGCAATTGGCCAGTTCAAAGGAAACTTCGTTGAAAGATTTACAAGACTTGGCAACTCGCTTGTTCGCCAAGATTAAGACAGTTCCTGTTTCCGAAGATACACAGAACGTTCCAGATTCTGATAGCAGCAAAAAGATACCCAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTCGCTAGATTTTTACTCTCCAGGTTT 2058 42.47 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHCEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIRNARKSPRLQERIRERPKYQIPKDEDEETPTNGTRAIGETSDTVKVSRNTREETIHASNQSKTPKNAGWDFSIGGPNSTGTVRSVVKPPQIRERKPDIPYGQAAPSRIPESGNWLAASGNASRDVAEDARDSYNTGDASEDEELSVSGSGTIVIRSPKGSQSSAQFHSQSSPSGNAQTYFEDTPFSGTVVMRGQRDDSDSPRTPLSRSGIQERTSSFSPEDSAVNLSEAKAAIQAGLKKANARERSAHKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALPKPSQSIHDDESAKVALSSAPLSKLFMPSLKEVVADDSEGSPARAVINALINMEHVKPGSCEVLVTKFLQQLASSKETSLKDLQDLATRLFAKIKTVPVSEDTQNVPDSDSSKKIPNRELHSNSNLSSLARFLLSRF 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7308079 7319584 - MC11g0862 Mch11g1051 679985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1051 686 MobiDBLite consensus disorder prediction 508 528 - -
Mch11g1051 686 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Mch11g1051 686 Coils Coil 41 68 - -
Mch11g1051 686 MobiDBLite consensus disorder prediction 650 669 - -
Mch11g1051 686 MobiDBLite consensus disorder prediction 273 299 - -
Mch11g1051 686 MobiDBLite consensus disorder prediction 406 451 - -
Mch11g1051 686 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1051 686 MobiDBLite consensus disorder prediction 273 490 - -
Mch11g1051 686 MobiDBLite consensus disorder prediction 320 352 - -
Mch11g1051 686 CDD STKc_MST3_like 14 287 - -
Mch11g1051 686 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1051 686 MobiDBLite consensus disorder prediction 470 490 - -
Mch11g1051 686 MobiDBLite consensus disorder prediction 503 560 - -
Mch11g1051 686 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 646 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Mch11g1051 686 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Mch11g1051 686 SUPERFAMILY Protein kinase-like (PK-like) 13 311 IPR011009 -
Mch11g1051 686 FunFam serine/threonine-protein kinase dst1 isoform X1 12 302 - -
Mch11g1051 686 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1051 K08838 - - csv:101214412 1163.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1051 Mch-Chr11:7308079 Mch9g2066 Mch-Chr9:21755076 1.02E-74 dispersed
Mch11g1051 Mch-Chr11:7308079 Mch4g2219 Mch-Chr4:23817061 1.50E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 6.8e-216 747.3
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.7e-222 769.2
Mch9g2066 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 51.3 4.3e-69 259.6
Mch9g2066 . 1 845 MAP Kinase Kinase Kinase Kinase AT1G69220 57.6 7.7e-243 837.0
Mch11g1051 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 6.2e-67 252.7
Mch4g2219 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.1 7.6e-252 866.7
Mch8g1508 . 24 630 MAP Kinase Kinase Kinase Kinase AT5G14720 55.1 7.2e-194 674.1
Mch10g1743 . 9 726 MAP Kinase Kinase Kinase Kinase AT4G24100 63.6 1.3e-241 832.8
Mch10g1743 . 11 727 MAP Kinase Kinase Kinase Kinase AT4G10730 63.9 6.0e-244 840.5
Mch8g1055 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 3.7e-133 472.2
Mch10g1743 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 59.0 9.8e-118 421.0
Mch8g1055 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 6.2e-214 740.7
Mch8g1508 . 30 377 MAP Kinase Kinase Kinase Kinase AT1G79640 67.8 1.5e-143 506.9
Mch4g2219 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 1.7e-104 376.7
Mch8g1508 . 24 350 MAP Kinase Kinase Kinase Kinase AT1G23700 56.1 1.3e-96 350.5
Mch8g1055 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 1.0e-88 324.3
Mch10g1743 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 6.3e-75 278.5
Mch5g0066 . 19 500 MAP Kinase Kinase Kinase Kinase AT4G14480 55.5 3.9e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77074 PF00069 Pkinase 4.80E-68 CL0016 Mch PK