Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1054 ATGACTGGAAAAGAGATTCTCCACAAGATGAAGGAAAAAGTAGGGCTGGGTTCCTCGGACCCCGACTCCGGAAAAGGAAAGAGCAAGATGTCGAAGCATGTCACACATGGATTTCACTTGGTGGAAGGGAAATCACATCATGCCATGGAAGATTATGTGGTTGCAGAGTTTAAGCAAGTTGATCATCACGAGCTTGGTTTATTTGCAATCTTTGATGGCCATTTGAGCAATGCTATCCCCGATTATTTACAGTCAAATTTATTTTCTAATATTATAAACGAGCCCGATTTTTGGACAGATCCGAAGAATGCAGTAAGGAAAGCATATAGGGAAACTGACGCATACATTTTAGAGAAGGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACAGCCATATTAATTGACTGTCAAATACTAGTAGTGGGCAACGTGGGGGACTCCCGTGCAGTTATCTGTAGGAACGGCAAGGCCAGTCAATTATCAGTCGATCACGAGCCAAGCGTTGAAAGAAAAAGCATCGAGAATAGAGGCGGTTTTGTAACAAATTTTCCTGGGGACGTTCCTCGTGTTGATGGGCAGTTGGCGGTTGCTAGGGCATTTGGTGACAGGAGCTTAAAGATTCACTTGAGCTCAGAGCCTGATGTGGTAGTGACGAAGATAGACGACGAGACTGAATTCGTTATCTTGGCAAGCGATGGATTGTGGAAGGTGATGTCGAACGAAGAAGCCGCAGAGTCCATCAGGCAAATAAAAGATGCTCGAGCGGCTGCCAAGCACCTGACAGAGGAGGCCCTCAAGAGAAAGAGCAAAGATGATATTTCCTGTATAGTTGTGAGATTTCAGTGA 852 44.84 MTGKEILHKMKEKVGLGSSDPDSGKGKSKMSKHVTHGFHLVEGKSHHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNAIPDYLQSNLFSNIINEPDFWTDPKNAVRKAYRETDAYILEKAVDFSHGGSTAVTAILIDCQILVVGNVGDSRAVICRNGKASQLSVDHEPSVERKSIENRGGFVTNFPGDVPRVDGQLAVARAFGDRSLKIHLSSEPDVVVTKIDDETEFVILASDGLWKVMSNEEAAESIRQIKDARAAAKHLTEEALKRKSKDDISCIVVRFQ 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7341252 7345545 + MC11g0865 Mch11g1054 679988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1054 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Mch11g1054 283 Coils Coil 245 265 - -
Mch11g1054 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Mch11g1054 283 SMART PP2C_4 31 280 IPR001932 -
Mch11g1054 283 Gene3D - 17 283 IPR036457 -
Mch11g1054 283 CDD PP2Cc 43 282 IPR001932 -
Mch11g1054 283 Pfam Protein phosphatase 2C 46 275 IPR001932 -
Mch11g1054 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch11g1054 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1054 Mch-Chr11:7341252 Mch1g2098 Mch-Chr1:20339398 3.55E-82 dispersed
Mch11g0475 Mch-Chr11:3037149 Mch11g1054 Mch-Chr11:7341252 3.27E-61 transposed
Mch11g0664 Mch-Chr11:4336020 Mch11g1054 Mch-Chr11:7341252 1.63E-107 transposed
Mch4g1826 Mch-Chr4:21120484 Mch11g1054 Mch-Chr11:7341252 4.36E-60 transposed
Mch11g1054 Mch-Chr11:7341252 Mch4g0141 Mch-Chr4:940150 1.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1054 K17506 - csv:101215129 496.123