Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1059 GGAACAAATGGATCGAGCTGGCGGACGAAAGCGCTGGACATCGAGGAAGCCAAGAAACAAGGCTTGTTATCACTTCCGATGATTCTCACCAATGTCTTCCTTTACCTAATCACTTTGGTATCTGTAATGTTCGCTGGTCATCTTGGCGAGCTTGAGCTCGCTGGTGCTACGCTGGCCAACGCATGGGCCGCCGGAACTGGCCTCGCTTTCATGACCGGATTAAGTGGAGCACTTGAGACGCTTTGTGGACAGGGATTCGGTGCAAAAGTATACAGAATGCTGGGCATCTATCTGCAAGCCTCCTGCATCATCTCCTTCTTCTTTTCAATCTTGATATCAATTTTGTGGTTCTTCACGGAACCCATATTAGTTTTTGTACATCAGGATCATGAAATATCCAAGATGGCTGCTGTCTATTTGAAGTTTCTCATTCCCGGAATATTTGCATATGGCTTCTTGCAGAACATCATAAGATTTCTTCAAATGCAATCTGTTGTCATGCCTCTAATTTTCTTCTCAGCGATACCTTTGGCCATCCACATTGGCACTGCATATGCTCTGGTTCACAAGACAGCTCTTGATTTCAAGGGGGCTCCTTTGGCTGCTTCTGTTTCTTTATGGATAGCAGTCATGATTTTGGCCATATACGTGCTTAAAGCTAAAAAGTTTGAGCATACTTGGGAAGGATTTTCTTTAGATACATTTAGTTACATTTTTAGGAGCTTGAAACTTGCCCTGCCTTCTGCGGCTATGGTATGTTTGGAATATTGGGCATTTGAGATTCTGATATTCTTGGCTGGCTTGACTCCAGACTCAAAAACAACCACATCTTTGATGGCAATGTGTGTGAGTACAGAAACAATTGCTTACATGATCATATATGGATTGAGTGCAGCTGCAAGCATAAGGGTATCAAATGAGTTGGGTGCAGGCAATCCTTGGAGAGCTAAGCATGCAATGTTTGTCAGTCTCAAGCTGTCAATCTTTCTCGGGATCACAGTTGTTTTAACATTAGTATTTGGTCATAGTATTTGGGCTGGCTTCTTCACTGATGTCCCCTTAATAAAAGATGAATTTGCATCCATCGTACCCCTACTGGCAGTTTCTTTGATGGAAGATTCTGTACTAGGCGTACTTTTAGGTGTGGCTAGAGGTTGTGGATGGCAGCATTTTGTTGTTTATATGAACTTGGCAACATTCTATTTAATTGGTCTGACAATTGCAGCCCTTCTTGGATTTAAGTTGAAACTATATGCTAAGGGCTTATGGATTGGTCTAATATGTGGTCTTTCCTGCCAAACACTTGCCCTCTTTTTAATAATAATTCGCTCAAGATGGACAAAGAGGGAG 1350 42.52 GTNGSSWRTKALDIEEAKKQGLLSLPMILTNVFLYLITLVSVMFAGHLGELELAGATLANAWAAGTGLAFMTGLSGALETLCGQGFGAKVYRMLGIYLQASCIISFFFSILISILWFFTEPILVFVHQDHEISKMAAVYLKFLIPGIFAYGFLQNIIRFLQMQSVVMPLIFFSAIPLAIHIGTAYALVHKTALDFKGAPLAASVSLWIAVMILAIYVLKAKKFEHTWEGFSLDTFSYIFRSLKLALPSAAMVCLEYWAFEILIFLAGLTPDSKTTTSLMAMCVSTETIAYMIIYGLSAAASIRVSNELGAGNPWRAKHAMFVSLKLSIFLGITVVLTLVFGHSIWAGFFTDVPLIKDEFASIVPLLAVSLMEDSVLGVLLGVARGCGWQHFVVYMNLATFYLIGLTIAALLGFKLKLYAKGLWIGLICGLSCQTLALFLIIIRSRWTKRE 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7368429 7370960 + MC11g0868 Mch11g1059 679993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1059 450 NCBIfam MATE family efflux transporter 26 423 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Mch11g1059 450 Pfam MatE 247 408 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Mch11g1059 450 Pfam MatE 26 185 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Mch11g1059 450 CDD MATE_eukaryotic 16 450 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Mch11g1059 450 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 448 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1059 K03327 - - mdm:114824036 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1084 Mch-Chr10:7983342 Mch11g1059 Mch-Chr11:7368429 9.46E-212 dispersed
Mch11g1059 Mch-Chr11:7368429 Mch6g0406 Mch-Chr6:2683531 2.14E-112 dispersed
Mch11g1058 Mch-Chr11:7364204 Mch11g1059 Mch-Chr11:7368429 1.33E-220 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67