Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1066 TTACGAAAATGTCCCCAGGCCCACTGGTGGTATTCCCAGCCTCAATCGAACGTTAACGAAAGTTCAAATTCAAATTCATCCTCCAGTCCTCGCTACTCCGCTCCGCCTCCATTTCCGTTCTTCTTCTTCTTCTTCGCCACTACTCCAATGGCTTCCTCCAATTCTTTCTACGCTACGCCGACCAAAACCCCTGTAGAAAAGTCGTCCAGAAAGGCTCAGAGCTCCAACCGGGTAGACGCGTCCGAGTCCAGATCCCGATTCGAAGCCTACAATCGCCTCCAGGCAGCCGCTGTGGCGTTTGGTGAGAAGCTTCCGATCCCTGAGATCGTCGCCTTGGGTGGCCAATCCGACGGCAAGAGCTCTCTCTTAGAAGCCCTCCTAGGGTTCCGCTTCAATGTCCGCGAGGTCGAAATGGGTACACGCAGGCCTTTGATCCTCCAGATGGTCCATGATCCTACCGCTCTCGAGCCCCGCTGCCGGTTTCAGGAGGAAGATTCTGAAGAATATGGAAATCCTGTAGTTTTAGCATCTGCAATTGCAGACATTATAAAGTCTCGAACTGAGGCACTATTGAAGAAGACTAAAAGTGCAGTTTCTTCCAAGCCAATTGTGATGAGAGCAGAATATGCACATTGTCCCAACCTTACCATTATCGATACCCCTGGCTTTGTTCTTAAGGCTAGGAAGGGGGAGCCGGAGAACACACCGGAAGAAATTCTTTCAATGGTGAAGTCACTCGCAAGTCCTCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGCGTAGAGTGGTGTTCATCATTGTGGTTGGATTCCATTCGTGAAATTGATCCAGCTTTCAGACGGACAATAGTTGTAGTCTCCAAATTTGATAATCGTCTTAAGGAATTCAGTGACCGATGGGAAGTAGATAAATATTTGAGTGCCAGCGGTTACCTTGGAGATAACACACACCCATTTTTTGTGGCCTTGCCAAAGGACAGAAATACTGTTTCTAATGATGAGTTTCGCCGCCAAATATCTCAAGTAGATTCCGAAGTTCTTCGTCACCTACGTGATGGTGTCAAGGGAGGATTCGATGAAGAGAAGTTTAGGTCTTATATTGGTTTTGGCTGCCTGAGGGAGTATTTAGAATCTGAGCTTCAGAAGAGGTACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGCTAGAGCAGCGTTGTGGTGAAGTTGCATCTGATCTATGTAGAATGGATACAAAAATTCAGGCTACTTCAGATATTGCACATCTTAGGAGATCTGCTATGCTGTATACAGCTTCTATCAGTAATCATGTGAGCGCATTGATTGAGGGAGCAGCAGATCCTGCTCCAGAGCAATGGGGGAAAACTACTTTGGAGGAACAGTCAGGAAGTGGCAATGGAAGTTGGCCTGGTGTTACATCAGAGGTGAAACCTGCAAACTCTACTCTTCGGTTGTATGGTGGTGCTGCTTTTGAAAGAGTAATGTTCGAGTTCCGATGTGCTGCTTATTCCATTGAGTGCCCTTCAGTTTCAAGAGAGAAGGTAAGAATGACCCGTTATTCAAATTTGATTCATTTTTCTAACTTTTGCTTAAGCTCCTTTGCTCTATGGAAACAGGTAGCAAACATATTACTTGCTCATGCTGGCAAACGTGGAGGTAGGGGATTAACAGAAGCAGCTGCAGAGATTGCCCGTGCAGCTGCACGATCGTGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCATTTGTATTGGAAAATCTTTTTGATCTTGCTCTGGAAAGAAATCGTGCCTATGAATCACAAAATGGGAAGAAGCACTGTAACATGGATGGCTATGTTGGTTTTCATGCTGCTTTAAGGCATGCTTACATCCGGTTTCTGAAGGATCTTGCTAAACAATGCAAGCAACTACTTCGTCACCACCTCGATTCTGTTACAAGCCCATATTCACTTGTCTGCTATGAGAACGACTTTGAAGGAGGCTCTTTCCAGAAAATCAATCGGGCCCCTGCAGGTTTGTTTTCATTTGAATTATCTGATTCTGGAGCAGTATCTCATGATGAAACGATGAAGGATCAGGAGAACATACCTCCAGAAAGGAACATACAGCAGATAACACCAGGAAAAGGTACAGAATCTAGAGAAGCCCTTCGAGAGTGCCAAATCACTGTTCCGGAGACTCCATCACCGGAGCAGCCTTGTGATGCTGGGTATGGAGTAAAGAAGGAATTTGGGAATGGGATGGATATTGGAGTTCGGAAAAGGGCTTCACGAGTGACCAGAACTTCTAACCGGATAAGCGGTCAAGATGGTGGGGGAACTTTATTTGGTAATGGTGATGGCAGTTCAAGATATAGCTCAGCCTACAAGGAAATTTGCTCATCCGCAGCACAGCATTTTGCCCGGATTCGTGAAGTTCTCATAGAGCGAAGTGTGATGTCTACATTGAATTCTGGATTTTTAACACCTTGTCGAGAAAGACTGGTAGTGGCACTTTGTTTGGAATTATTCGCCGTGAATGACGAGAAATTCACAGACATGTTCGTAGCTCCGGGTGCTATTGAGGTACTTCAGAATGAAAGACAGTCTCTCCAAAAGCGTCAAAAGATACTACAGACATGTTTGAATGAGTTCAAAACTGTAGCTCAATCACTTTGTTGA 2670 45.58 LRKCPQAHWWYSQPQSNVNESSNSNSSSSPRYSAPPPFPFFFFFFATTPMASSNSFYATPTKTPVEKSSRKAQSSNRVDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALEPRCRFQEEDSEEYGNPVVLASAIADIIKSRTEALLKKTKSAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPEEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKEFSDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKFRSYIGFGCLREYLESELQKRYKEAAPATLALLEQRCGEVASDLCRMDTKIQATSDIAHLRRSAMLYTASISNHVSALIEGAADPAPEQWGKTTLEEQSGSGNGSWPGVTSEVKPANSTLRLYGGAAFERVMFEFRCAAYSIECPSVSREKVRMTRYSNLIHFSNFCLSSFALWKQVANILLAHAGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCNMDGYVGFHAALRHAYIRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENDFEGGSFQKINRAPAGLFSFELSDSGAVSHDETMKDQENIPPERNIQQITPGKGTESREALRECQITVPETPSPEQPCDAGYGVKKEFGNGMDIGVRKRASRVTRTSNRISGQDGGGTLFGNGDGSSRYSSAYKEICSSAAQHFARIREVLIERSVMSTLNSGFLTPCRERLVVALCLELFAVNDEKFTDMFVAPGAIEVLQNERQSLQKRQKILQTCLNEFKTVAQSLC 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7420716 7425125 - MC11g0873 Mch11g1066 680000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1066 889 MobiDBLite consensus disorder prediction 59 80 - -
Mch11g1066 889 MobiDBLite consensus disorder prediction 758 781 - -
Mch11g1066 889 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 103 390 IPR030381 GO:0005525(InterPro)
Mch11g1066 889 PANTHER DYNAMIN 88 881 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Mch11g1066 889 SMART dynamin_3 83 317 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1066 889 FunFam Dynamin-related protein 5A 75 441 - -
Mch11g1066 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 397 IPR027417 -
Mch11g1066 889 PRINTS Dynamin signature 106 124 IPR022812 -
Mch11g1066 889 PRINTS Dynamin signature 209 226 IPR022812 -
Mch11g1066 889 PRINTS Dynamin signature 278 294 IPR022812 -
Mch11g1066 889 PRINTS Dynamin signature 131 148 IPR022812 -
Mch11g1066 889 Pfam Dynamin family 109 289 IPR045063 -
Mch11g1066 889 Gene3D - 74 440 IPR027417 -
Mch11g1066 889 CDD DLP_1 104 390 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1066 889 MobiDBLite consensus disorder prediction 59 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1066 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1066 Mch-Chr11:7420716 Mch4g0928 Mch-Chr4:7173575 2.19E-54 dispersed
Mch11g1066 Mch-Chr11:7420716 Mch5g0250 Mch-Chr5:1664137 1.26E-18 transposed
Mch11g1066 Mch-Chr11:7420716 Mch6g2138 Mch-Chr6:23775087 1.39E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27