Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1069 ATGTGTGTGTACCGGTTTACATGCAGCTTTAAGTGGATGACAATGGAGACATCATCTGATCACCTTAAGAACCAGGACGATTCATCTGGGGTTTGTGAGGAAGATATACTGGCCGACCCCTATGTGCGTTCTATTAAATGGAGTGATGTTAGCTTGAGGCAATGGTTGGATAAGCCAGAAAGATCTGTGAATGCTCTGGAGTGCCTTCATATATTTAGGCAAATAGTGGAGATTGTTAACATAGCTCATTCACAAGGCATTGTTGTTCATAATGTGCGTCCTTCATGCTTTGTGATGTCCTCTTTCAACCACGTAACTTTTATTGAGTCTGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGACTAAATAGTCAAATTGCAGAGGTCAAAAAATCATCTTCTCCCTTCCCAAGCAGCCATGGAAGCGAGGGGTTTCGATCAGTTATGACCCCCATAAATACTTTGTCGGAAACTAGTTGTATGCAGTCCAGTTCAGTATATGCAGCACATATGCCATTAAACGAAGGGTCTGGAGAATGTAGAAAGAAAGATAGAAGACATATTGAAGAAGCAGAAGATAAGATGCAATCATTTCCAATGAAACAGATATTGGCCGTGGAGACTACTTGGTACACTAGCCCCGAAGAGGCTTCTGGTGGCCCCAGTTCCAGTGCTTCAGATATATACCGTTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGGGAAGAGTAAAACTATGTCGAGCTTGAGACATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAAGTAATCGGCCTAAGCTAAGAAGAAGCAGTTATCATGCTTCCCTTTTCTTCTTGTTTTACAGTGAGTTATTGCAGAGTGAATTTCTTAATGAACCAAGAGATGATCTAGAAGAACGTGAAGCAGCAATCGAGCTTAGAAAAAGAATTGAGGAGCAGGATTTGCTGCTAGAATTTCTTTTGCTTACACAACAAAGAAAACAGGAAGCTGCTCATAGGTTGCAAGATACTGTATCATTTCTGTGCAATGACATCGAACAAGTCACGAGACACCAAACTAATTTCAGGAAAAAGAATGGTTCTTGCCCAGATCTTGAGAAGGACAATCATTTGCAATTAAATTTCCCTTCAATGACTCCTGTTGAAAATACTGATTCTGCTAGCTTGGGGTCAAGGAAACGATTTAGGCCAGGAATTTTGATCCATGATATGGAAGCATGCGGTGATAATCTTGATGACAGTGAGAAGTCAAGCTCAGCTAATGAAAATGAACAAGGCGTACTTTTTAAGAGTTCTCGGTTGATGAAGAACTTGAAGAAATTGGAGCTAGCATATCTTTTGATGAGAGGTAGGGTAAACAAGCCATCGGGGAGGCAGTTTGTTAAGCACTCGTCTATAAGTAGTGATGGTAGAGGGTCGGTTGTTATGACTGAAAGAAGTTCAGTTAATAATTTGGCTCCCAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCATTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGCAGCAAGGCGATCTGTTGAATTCCTCCAACCTAGTATGTTCTCTCAGTTTTGACCGTGATGGAGAATTTTTTGCCACAGCCGGTGTTAATAGGAAAATCAAAGTGTTTGGATATGACTCAATCATAAATGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGGTAGCAGGTCAAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAGGGCATAGTGCAGGTGTGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGGAGAACACGAGAGGCGCGTATGGTCCATCGACTTCTCATCAGCCGATCCAACAATGTTGGCTAGCGGGAGTGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGTCCGCTTTGAAACTAAACGTACTACAGGTACAAGTATTGGCACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGCGGATTCTGGTCGGTCCCTCGCATTTGGTTCAGCAGATCACAAAATTTATTACTATGATATTCGGAATATAAGAGTTCCTTTGTGCACCTTCACTGGACATAACAAAACTGTAAGTTACGTCAAGTATATAGACTCGAGCACACTTGTTTCTGCATCCACTGACAACACCTTGAAGCTCTGGGATTTGTCCACATTCACCTCTCGGGTTGTCGATTCCCCAGTCCAGTCATTCACGGGCCACATGAATGTAAAGAACTTCGTGGGACTATCAGTCTCTGATGGGTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCCAGACACGAAATGGACCACACCGTGCAGTTTATCTCTTCAGTTTGTTGGCGTGGCCAGTCGTCTTCATTAGTAGCTGCTAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2652 41.93 MCVYRFTCSFKWMTMETSSDHLKNQDDSSGVCEEDILADPYVRSIKWSDVSLRQWLDKPERSVNALECLHIFRQIVEIVNIAHSQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQIAEVKKSSSPFPSSHGSEGFRSVMTPINTLSETSCMQSSSVYAAHMPLNEGSGECRKKDRRHIEEAEDKMQSFPMKQILAVETTWYTSPEEASGGPSSSASDIYRLGVLLFELFCSFSSREGKSKTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLRRSSYHASLFFLFYSELLQSEFLNEPRDDLEEREAAIELRKRIEEQDLLLEFLLLTQQRKQEAAHRLQDTVSFLCNDIEQVTRHQTNFRKKNGSCPDLEKDNHLQLNFPSMTPVENTDSASLGSRKRFRPGILIHDMEACGDNLDDSEKSSSANENEQGVLFKSSRLMKNLKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVMTERSSVNNLAPKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLQQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIINEDRDIHYPVVEMGSRSKLSSVCWNRYIKSQIASSNFEGIVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAILFLHLVDVRFETKRTTGTSIGTIRTKANVCCVQFPADSGRSLAFGSADHKIYYYDIRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSTFTSRVVDSPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSRHEMDHTVQFISSVCWRGQSSSLVAANSTGHIKILEMV 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7444657 7452486 - MC11g0876 Mch11g1069 680003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1069 883 SUPERFAMILY WD40 repeat-like 553 880 IPR036322 GO:0005515(InterPro)
Mch11g1069 883 PRINTS G protein beta WD-40 repeat signature 664 678 IPR020472 -
Mch11g1069 883 PRINTS G protein beta WD-40 repeat signature 621 635 IPR020472 -
Mch11g1069 883 PRINTS G protein beta WD-40 repeat signature 766 780 IPR020472 -
Mch11g1069 883 Pfam WD domain, G-beta repeat 744 779 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 Pfam WD domain, G-beta repeat 641 677 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 Pfam WD domain, G-beta repeat 556 583 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 782 - -
Mch11g1069 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 698 737 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 549 584 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 788 827 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 842 881 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 594 634 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 637 677 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 SMART WD40_4 741 779 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 782 IPR001680 GO:0005515(InterPro)
Mch11g1069 883 Gene3D Transferase(Phosphotransferase) domain 1 48 303 - -
Mch11g1069 883 ProSitePatterns Trp-Asp (WD) repeats signature. 766 780 IPR019775 -
Mch11g1069 883 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1069 883 Gene3D - 530 883 IPR015943 GO:0005515(InterPro)
Mch11g1069 883 SUPERFAMILY Protein kinase-like (PK-like) 47 293 IPR011009 -
Mch11g1069 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
Mch11g1069 883 PANTHER PROTEIN SPA1-RELATED 2 35 883 IPR044630 GO:0009640(InterPro)
Mch11g1069 883 Coils Coil 319 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1069 K26557 - - csv:101205812 1467.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1069 Mch-Chr11:7444657 Mch6g1938 Mch-Chr6:21867859 9.68E-174 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45