Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1093 ATGGCCACCAAAACCAAAACCAAAATCAAAATCCTCCAAAATTTCTGCTATTCTGTCATCGTCTTCTTCCTCTGCTCCCATGCCGCAGCTCAGAGTTTGGCCCAAAATGAAGAAGAAGAAGTTCAAAGATCTGAGTTTCCACGCGATTTCTTCTTTGGAACTTCCACTTCCTCTTACCAGATTGAAGGAGCTTTTCTTGAAGATGGAAAGGGAATCAGTAATTGGGACGTTTTTACTCATATTCCAGGAAAAATCAAGAACAATGACACCGGAGATGTCGCCGACGACCACTACCACCGCTTTCTGGAAGATATTGAGCTGATGCATTCAATGGGGATGAATGCGTATCGCTTTTCCATTTCCTGGACCCGAATCTTGCCCAGAGGAAGTTTTGGAAAAATCAACAGAAGAGGGATCACCTTCTACAACAAAATCATTGACCACTTGTTGCTAAGAGGCAGCATGGAGTCGTTCGTGACAATTCACCATCATGACCTACCAATTGAACTCGAAAAGAGATATGGTGGTTGGATGAGCCGTCAAATGCAGAAAGACTTTGTCTACCTTGCAAAAATTTGCTTTGCAAAATTTGCTTGGAAGTTTGGAGATAGGGTGAAGCATTGGATGACCATAAAGGAGCCTAATCTGGTGACATTAAAGGCATATATACAAGGAAATTACCCACCAGCCCATTGCTCGCCCCCTTTCGGAAACTGCTCCACTGGCAACTCTGATATCGAGCCTCTCATTGTCATGCACAACATGTTGCTGGCCCATGCTAAGACTGTTCGCCTTTACCGCACCTATTTTCAAGCAAGTGGATCCATAGGGACAGTAGCATACACACATATGTATGAGCCATTAAGAGACGAGGAATCAGACAGACAAGCTGCAAAAAGAGCCTTCATTTTCAACTTAGCCTGGGTGTATGATCCAATTGTGTACGGAGATTATCCTAAGGAAATGCGAGAGCTTTCAGGAAGCCAACTTCCTAACTTCTCAAACGTTGAGAAAGATATAATGAGAGGAAGTCTGGACTTCATTTGCATAAACCACTATAGCACTCTTTATGCACAGGATTGTCTTCACTCTCTCGCTTGCTCAAGTGGTGCAAACCGCCCTATAAATGGATTTGTTGACACCTTTGGTTACCGAGATGGCATCCCCATTGGAGATCCGACTGGGATGGAAAGGTTCTTTGTTGTTCCGAGAGGCATGGAAAAGATCAACTATGTTAAAGAAAGGTATCCAAAGAGACCCATCTTTGTTACAGAAAATGGTAAGTTAAGCAAAAATGTATCTATAATTACTTTTATGAATATTGTAAATGACTTGAAACGAGTCAAATTCCACGAGAGCTACCTAGCTTCCTTGGCCAGAGCAATGAGGAATGGTGCTGATGTGAGAGGGTATTTTGTATGGTCCTTAATGGACAACTTCGAGTGGGCCGATGGATTGGGCACAAGGTTTGGGCTTTTGTACGTGGACTGGCACACACTTGAACGCCGGCCCAAACTCTCGGCCCACTGGTTTGCTTCTTTTCTC 1545 43.69 MATKTKTKIKILQNFCYSVIVFFLCSHAAAQSLAQNEEEEVQRSEFPRDFFFGTSTSSYQIEGAFLEDGKGISNWDVFTHIPGKIKNNDTGDVADDHYHRFLEDIELMHSMGMNAYRFSISWTRILPRGSFGKINRRGITFYNKIIDHLLLRGSMESFVTIHHHDLPIELEKRYGGWMSRQMQKDFVYLAKICFAKFAWKFGDRVKHWMTIKEPNLVTLKAYIQGNYPPAHCSPPFGNCSTGNSDIEPLIVMHNMLLAHAKTVRLYRTYFQASGSIGTVAYTHMYEPLRDEESDRQAAKRAFIFNLAWVYDPIVYGDYPKEMRELSGSQLPNFSNVEKDIMRGSLDFICINHYSTLYAQDCLHSLACSSGANRPINGFVDTFGYRDGIPIGDPTGMERFFVVPRGMEKINYVKERYPKRPIFVTENGKLSKNVSIITFMNIVNDLKRVKFHESYLASLARAMRNGADVRGYFVWSLMDNFEWADGLGTRFGLLYVDWHTLERRPKLSAHWFASFL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7626351 7634492 + MC11g0898 Mch11g1093 680027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1093 515 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 50 64 IPR033132 -
Mch11g1093 515 FunFam Beta-glucosidase 12 31 515 - -
Mch11g1093 515 Pfam Glycosyl hydrolase family 1 43 514 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 PRINTS Glycosyl hydrolase family 1 signature 489 501 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 PRINTS Glycosyl hydrolase family 1 signature 444 455 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 PRINTS Glycosyl hydrolase family 1 signature 421 429 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 PRINTS Glycosyl hydrolase family 1 signature 344 358 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 PRINTS Glycosyl hydrolase family 1 signature 465 482 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Mch11g1093 515 Gene3D Glycosidases 24 515 - -
Mch11g1093 515 SUPERFAMILY (Trans)glycosidases 40 514 IPR017853 -
Mch11g1093 515 PANTHER GLYCOSYL HYDROLASE 27 512 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)|GO:0008422(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1093 K05350 - - csv:101220587 757.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1093 Mch-Chr11:7626351 Mch3g1222 Mch-Chr3:15372449 7.46E-165 dispersed
Mch4g1295 Mch-Chr4:15906178 Mch11g1093 Mch-Chr11:7626351 3.94E-06 dispersed
Mch11g1092 Mch-Chr11:7616578 Mch11g1093 Mch-Chr11:7626351 3.29e-317 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g268 Blo03g00640 . Bda07g00284 . . . . . . . . Cma09g00883 . Car09g00801 . Cpe06g00707 . Bhi09g02020 Tan01g4429 Cmetu04g2876 . Hepe01g1367 Mch11g1093 . . . . . . . . . . . . . . . . . . . . Bpe11g00493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000954 1 8 1 1 1 0 1 3 0 4 2 4 1 4 4 0 0 1 1 3 3 4 1 2 1 9 2 1 2 2 67