Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1110 TATTGTCAAATTAACCAGATATTTACCGTGAAGAAGAAGAAAGGTGGTCATTTTTTATCTTCATTGTTCAAGCCGCGACTTGGCGCCTCTTTCAGTTTCTGGAGCAACATGTGGGGCTTATCCTGCTCCTCCCTTGCTTATCCTTCGCCTAATTTCAGACCTTTCGCTCCGGCAGCAACCCTTCGCTCCGGCACTTCTCTGCCGGTGCCCGTCGATCGGAATCATTACACTTCCGACACCCCATTTGCTCCGGAGGTTGTTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGAGCAGTGGATAATCTGGTGGCACGTAATACTGCTAAAGTTCTCAAAGCCTTTCAGAACGCTCGGTTAGGATCTCATCATTTTGGCGGATCCACTGGTTATGGCCACGATGAAGCTGGAGGGCGTGAGGCACTTGACAATGCTTTTGCTGAGATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCCATTACATGTGCCTTATTTGCACTTTTGAGGCCAGGGGATGAGCTTTTGGCGGTAGCTGGTGCTCCATATGACACACTAGAGGAGGTCATAGGAAAAAGAGATTCTCAGGGGCTGGGCTCCTTGAAAGATTTTGGAGTAGACTATCGAGAAGTTCCACTTGCCGAGGATGGTGGACTTGATTGGGAAAAACTTGCAAGTTCTTTGAAACCTCAAACAAAATGTGCGCTCCTACAAAGGTCGTGTGGTTATTCTTGGCGTCGAAGTTTAAGTGTTAGTGAAATAGGAAGAGCAATAAAACTGATTAAGAAGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTACGGAGAATTTGTGGAAACCACTGAACCTCCAACTGTGGGTGCGGACTTAATTGCAGGAAGTCTGATAAAAAACCCTGGTGGAACGCTTGCACCTTGTGGCGGATACGTTGCAGGTCGAGACAAATGGGTAAGAGCTGCTGCAGCTCGTTTGTCTGCACCTGGCTTGGGCGTGGATTCGGGCTCTACTCCCGGTGATATCATGAGGACATTTTTTCAAGGGTTATTCCTTTCACCTCAAATGGTTGGCGAGGCAGTTAAGGGAATGATTCTAATAGCTGAAGTCATGGCATCAAAAGGCTACAAAGTGCAGCCGCTCCCACGCTCGCCCCGTCACGACACCGTTCAGGCAGTAAAACTCGGAAGTCGTGAACTTTTACTTGCATTCTGTGAGGCTGTACAGAGAAGCTCCCCCGTGTCTTCGTTTACCAAACCTGTTCCGGGAGTAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGGACTTTCATTGATGGAAGCACTAGTGAACTTTCATGTGATGGACCTCTCAGAGAACCATTTGCAGTCTTTTGCCAGGGTGGAACACATTGGACTCAGTGGGGCTTAGTACTAGGAGAAATTTTGAAATCTATATAG 1467 47.38 YCQINQIFTVKKKKGGHFLSSLFKPRLGASFSFWSNMWGLSCSSLAYPSPNFRPFAPAATLRSGTSLPVPVDRNHYTSDTPFAPEVVKAVDSLQYEFRAVDNLVARNTAKVLKAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDELLAVAGAPYDTLEEVIGKRDSQGLGSLKDFGVDYREVPLAEDGGLDWEKLASSLKPQTKCALLQRSCGYSWRRSLSVSEIGRAIKLIKKQNPDCLVMVDNCYGEFVETTEPPTVGADLIAGSLIKNPGGTLAPCGGYVAGRDKWVRAAAARLSAPGLGVDSGSTPGDIMRTFFQGLFLSPQMVGEAVKGMILIAEVMASKGYKVQPLPRSPRHDTVQAVKLGSRELLLAFCEAVQRSSPVSSFTKPVPGVTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEILKSI 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7748321 7753033 + MC11g0913 Mch11g1110 680044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1110 488 Gene3D - 83 133 - -
Mch11g1110 488 Pfam Methionine gamma-lyase 88 487 IPR009651 -
Mch11g1110 488 Gene3D - 134 342 IPR015421 -
Mch11g1110 488 Gene3D - 343 488 - -
Mch11g1110 488 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 37 488 IPR009651 -
Mch11g1110 488 SUPERFAMILY PLP-dependent transferases 93 421 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1110 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34