Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1144 ATGGACTCTCACCAAATTTTTGGATTTGGGGTAAACAGTGCAGGTGTTTCATACACATCTTCTTATTCCTCTGTTCCATCTTTGCCTAATACTTATCTTGGACCCTTGAACTTCAACTTAAGAAACTCCCCGACGTCGCTTTTCTCATCGTCCCATTTAGATTCGGACTCCTTTACGACGCCGAGTGATAGTCAGGATCAGAGATACTCGCCTGAGAATCTGTCTGGGCTTAGCCCTTCTTGTAATTCGTCGTTTGAAACAAATAGCTTTCATCATACAGCCTCGCCGTATTTGGATCATTGCGAGGAGAGTCGAGGAATTTATTCGGGGACGAGCGCGTTTGATTATGAGGGATGCTCGACTGAGAACATAAGGTACGCTTTGAAACAATTGGAGACTGCTCTGATGGGGCCGGATAATGAGGAGGTTGCTAGCAAGCCGGATGCTTCATTTGGAGAGAGTAGTAGGCCCCAGATGATGGGGCAGAGGTCCTACTCTTGGAGCCAAGATCGACGTGGGTCGAATATTGGCCAGTCTCAGACTTCGTCTGTCTCGAGAAGCCAGCAGCCTGAAGCGGTTCATTTGGGGAAACGTCAGAAGTCGTTGGATGAATCGTTGTTGCAGGGAGGATTTCCATCAGATAATTTGAAGGAGTTGCTGATTGCTTGTGCAAAAGCTTTAGCTGAAAACAGGATGGAGGATTTTGACAACTTGGTTGCCACAGCAAGAGGTGCTGTGTCCATCAGCGGAGAACCGATCCAGCGTCTTGGTGCTTACATGGTCGAAGGGCTGGTGGCGAGGAAAGAGGCATCAGGAGCGTGTATATACCGTGCCCTCAACTGTAGAGAGCCTGCAAGTAACGATTTGCTATCTTACATGCATATGCTATACGAAATCTGCCCCTACTTGAAGTTCGGTTACATGGCAGCGAACGGGGCAATTGCTGAAGCCTGCAGAAATGAAGACCGCATCCACATCATAGATTTCCAGATTACTCAGGGGACGCAGTGGTTAACTCTTCTTCAGGCACTCGCAGCAAGGCCCAGTGGGGCTCCCCATGTGAGGATAACCGGTATCGATGACCCTGTTTCAAAATACGCCCGCGGTGACGGGTTGGAAGTAGTGGAGAGGCGGTTGGCTGAAATCTCCAGGAAGTACGACATACCCGTCGAGTTTCATGGAGTACCTGTTTTCGCTCCAGACATCAGGTGCGATATGCTCGACATCAGGCCTGGGGAGGCGCTGGCTGTGAACTTCCCATTGCAACTTCATCATACCCCGGACGAAAGCGTCAACGTGAACAATCCTCGAGACGGTCTGCTGAGAATGGTGAAGTCATTATCCCCAAAGGTAGTAACTTTGGTAGAACAAGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTGTGGAAACTTTGAATTACTATTTGGCAATCTTTGAGTCCATTGATGTCACTCTACCAAGGAACAACAAGAAGCGCATCAATGTGGAGCAGCATTGTTTGGCAAAAGACATCGTTAATGTCATCGCTTGCGAGGGGATCGAACGGGAAGAGCGGCACGAGCTCTTCGGGAAGTGGAAATCGAGGTTGACAATGGCAGGGTTCCGCCAGTTCCCGTTGAGCTCTTATGTCAACAATGTCATCAGGGGCCTGCTCGGGTATTATTCCGAGCACTACACTCTCGTTGAGAGAGATGGAGCGATGCTGTTGGGATGGAAAAACAGGAACCTGATATCTGCCTCGGCTTGG 1755 49.12 MDSHQIFGFGVNSAGVSYTSSYSSVPSLPNTYLGPLNFNLRNSPTSLFSSSHLDSDSFTTPSDSQDQRYSPENLSGLSPSCNSSFETNSFHHTASPYLDHCEESRGIYSGTSAFDYEGCSTENIRYALKQLETALMGPDNEEVASKPDASFGESSRPQMMGQRSYSWSQDRRGSNIGQSQTSSVSRSQQPEAVHLGKRQKSLDESLLQGGFPSDNLKELLIACAKALAENRMEDFDNLVATARGAVSISGEPIQRLGAYMVEGLVARKEASGACIYRALNCREPASNDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVERRLAEISRKYDIPVEFHGVPVFAPDIRCDMLDIRPGEALAVNFPLQLHHTPDESVNVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFVETLNYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGIEREERHELFGKWKSRLTMAGFRQFPLSSYVNNVIRGLLGYYSEHYTLVERDGAMLLGWKNRNLISASAW 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8022143 8023897 - MC11g0943 Mch11g1144 680078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1144 585 MobiDBLite consensus disorder prediction 51 77 - -
Mch11g1144 585 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 180 585 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch11g1144 585 MobiDBLite consensus disorder prediction 151 194 - -
Mch11g1144 585 ProSiteProfiles GRAS family profile. 207 585 IPR005202 -
Mch11g1144 585 Pfam GRAS domain family 216 585 IPR005202 -
Mch11g1144 585 MobiDBLite consensus disorder prediction 138 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1144 K27748 - - csv:101216606 944.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1144 Mch-Chr11:8022143 Mch2g0480 Mch-Chr2:3477411 5.98E-170 dispersed
Mch11g1144 Mch-Chr11:8022143 Mch3g0228 Mch-Chr3:3043057 1.55E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g405 Blo03g00589 . Bda07g00332 . . . . . . . Cma01g01159 Cma09g00916 . Car09g00833 Sed07g2646 . Cpe02g00742 Bhi09g01957 Tan01g4496 Cmetu04g0683 . Hepe01g1320 Mch11g1144 . . . . . . . . . Cone9ag0110 . . Lsi04g01253 . Chy04g01026 . . . . . Bpe11g00518 . . Bma14g00364 . Cmo01g01214 Cmo09g00910 . . . Car16g00572 . . . . . . . . . Cla05g01549 . . Cco05g1701 Clacu05g1649 Cmu05g1543 Cre05g1656 . . . Cme04g00788
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1847 . 64 740 GRAS Transcription Factor Family AT2G37650 55.0 7.0e-200 694.1
Mch9g0222 . 142 529 GRAS Transcription Factor Family AT3G13840 58.0 2.4e-125 446.0
Mch5g1847 . 276 741 GRAS Transcription Factor Family AT3G46600 50.4 4.5e-125 445.3
Mch1g1273 . 45 460 GRAS Transcription Factor Family AT3G49950 62.3 1.2e-138 490.0
Mch2g0888 . 121 787 GRAS Transcription Factor Family AT1G07530 50.3 1.5e-179 626.7
Mch10g0747 . 66 523 GRAS Transcription Factor Family AT4G36710 54.4 1.1e-130 463.8
Mch10g0967 . 22 438 GRAS Transcription Factor Family AT5G41920 67.3 5.9e-151 530.8
Mch1g0582 . 447 823 GRAS Transcription Factor Family AT5G41920 56.4 4.0e-115 411.8
Mch1g1496 . 1 612 GRAS Transcription Factor Family AT5G66770 58.0 3.8e-183 638.3
Mch10g0732 . 1 611 GRAS Transcription Factor Family AT5G66770 58.7 8.8e-180 627.1
Mch2g0480 . 57 546 GRAS Transcription Factor Family AT1G50600 59.9 1.3e-166 583.2
Mch1g1701 . 111 550 GRAS Transcription Factor Family AT1G50600 56.5 1.4e-139 493.4
Mch11g1144 . 215 585 GRAS Transcription Factor Family AT1G50600 62.5 3.1e-136 482.3
Mch4g1417 . 38 570 GRAS Transcription Factor Family AT1G14920 66.5 1.0e-203 706.4
Mch4g1687 . 67 608 GRAS Transcription Factor Family AT1G14920 60.9 6.8e-179 624.0
Mch8g2309 . 51 581 GRAS Transcription Factor Family AT1G14920 60.4 7.0e-176 614.0
Mch4g1687 . 67 605 GRAS Transcription Factor Family AT1G66350 61.4 4.6e-177 617.8
Mch8g2309 . 1 578 GRAS Transcription Factor Family AT1G66350 58.0 1.3e-174 609.8
Mch4g1417 . 1 568 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-170 596.3
Mch2g0888 . 253 788 GRAS Transcription Factor Family AT1G07520 50.5 3.2e-144 508.8
Mch2g0480 . 19 546 GRAS Transcription Factor Family AT5G48150 65.4 5.4e-191 664.1
Mch1g1701 . 16 550 GRAS Transcription Factor Family AT5G48150 51.4 3.0e-149 525.4
Mch11g1144 . 108 585 GRAS Transcription Factor Family AT5G48150 51.9 2.4e-138 489.2
Mch11g1412 . 184 576 GRAS Transcription Factor Family AT5G48150 53.1 4.2e-119 425.2
Mch4g1417 . 40 567 GRAS Transcription Factor Family AT2G01570 68.7 4.8e-210 727.6
Mch4g1687 . 69 606 GRAS Transcription Factor Family AT2G01570 61.3 5.5e-182 634.4
Mch8g2309 . 52 579 GRAS Transcription Factor Family AT2G01570 61.2 4.1e-177 618.2
Mch4g1687 . 67 605 GRAS Transcription Factor Family AT1G66350 61.4 4.6e-177 617.8
Mch8g2309 . 1 578 GRAS Transcription Factor Family AT1G66350 58.0 1.3e-174 609.8
Mch4g1417 . 1 568 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-170 596.3
Mch4g1687 . 69 606 GRAS Transcription Factor Family AT3G03450 60.3 4.8e-172 601.3
Mch4g1417 . 40 567 GRAS Transcription Factor Family AT3G03450 59.6 5.0e-169 591.3
Mch8g2309 . 52 579 GRAS Transcription Factor Family AT3G03450 60.5 1.9e-168 589.3
Mch4g1687 . 68 608 GRAS Transcription Factor Family AT5G17490 55.9 2.1e-156 549.3
Mch4g1417 . 36 567 GRAS Transcription Factor Family AT5G17490 56.5 1.8e-155 546.2
Mch8g2309 . 53 580 GRAS Transcription Factor Family AT5G17490 56.0 1.4e-149 526.6
Mch11g1412 . 1 576 GRAS Transcription Factor Family AT1G21450 56.1 8.1e-173 604.0
Mch2g0480 . 168 546 GRAS Transcription Factor Family AT1G21450 53.2 2.2e-117 419.9
Mch11g1144 . 217 585 GRAS Transcription Factor Family AT1G21450 50.3 1.1e-105 380.9
Mch5g1847 . 292 741 GRAS Transcription Factor Family AT5G59450 50.8 2.2e-125 446.4
Mch1g1701 . 1 549 GRAS Transcription Factor Family AT4G17230 58.4 6.3e-177 617.5
Mch2g0480 . 1 545 GRAS Transcription Factor Family AT4G17230 50.5 9.8e-146 513.8
Mch11g1144 . 212 585 GRAS Transcription Factor Family AT4G17230 51.9 5.6e-109 391.7
Mch2g0480 . 134 546 GRAS Transcription Factor Family AT2G04890 66.0 7.1e-160 560.5
Mch11g1144 . 215 585 GRAS Transcription Factor Family AT2G04890 60.6 1.3e-129 459.9
Mch1g1701 . 170 550 GRAS Transcription Factor Family AT2G04890 58.8 2.6e-125 445.7
Mch6g1194 . 1 471 GRAS Transcription Factor Family AT1G50420 68.2 1.2e-179 626.3
Mch9g1760 . 1 461 GRAS Transcription Factor Family AT1G50420 60.8 3.1e-154 542.0
Mch10g1559 . 407 775 GRAS Transcription Factor Family AT4G00150 55.2 9.8e-104 374.4
Mch1g1496 . 1 612 GRAS Transcription Factor Family AT3G50650 51.1 5.3e-155 544.7
Mch10g0732 . 1 611 GRAS Transcription Factor Family AT3G50650 53.7 6.5e-153 537.7
Mch1g0582 . 176 821 GRAS Transcription Factor Family AT3G54220 61.5 1.6e-201 699.5
Mch10g0967 . 71 436 GRAS Transcription Factor Family AT3G54220 63.7 1.3e-134 477.2
Mch1g1285 . 111 498 GRAS Transcription Factor Family AT4G37650 69.1 1.9e-157 552.7
Mch2g1341 . 2 386 GRAS Transcription Factor Family AT4G37650 58.8 4.9e-129 458.4
Mch7g0125 . 56 442 GRAS Transcription Factor Family AT4G37650 52.0 1.6e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008964 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42620 PF03514 GRAS 1.20E-126 CL0063 Mch TF