Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1152 | ATGGTATCTCCCGAAAATCCCAATTGGTTGTTTGACTATGGTTTGATCGACAACATCCCTGTACCGGATGCGAATTTCCCAGTTACAAGTTCAAGCTTCTCGTGGGCTGTTCAACCCTTGAATGGCACCCCTGATGTCGGTGTGGAAATTGATGGATCGTTGGCAGAACCAGATGGCCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATTTAGTGCATCAAGCTCCAAAGCGTGTAGGGAGAAGTTACGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTGGGGAAGCCCAGAAACTAAAGGAATCCAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCAAACGAGAAGAATGAGCTCCGTGACGAAAAGCAGCGGCTCAAGGCAGATAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCAACCTGGCTTCTTACCTCCAGCCATCCCTACATTTGCTGCTGCTCAGAGCCAAGCTCCGGGCAATAAGTTGGTTCCTTTCATTGGTTACCACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCCGCTGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCTGTTGCT | 708 | 49.29 | MVSPENPNWLFDYGLIDNIPVPDANFPVTSSSFSWAVQPLNGTPDVGVEIDGSLAEPDGRLESGSKKRVRSDSFSASSSKACREKLRRDRLNDRFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKIKELKANEKNELRDEKQRLKADKEKLEQQVKSMHAQPGFLPPAIPTFAAAQSQAPGNKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8087487 | 8089897 | + | MC11g0951 | Mch11g1152 | 680086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1152 | 236 | PANTHER | BHLH TRANSCRIPTION FACTOR | 9 | 236 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Mch11g1152 | 236 | MobiDBLite | consensus disorder prediction | 53 | 74 | - | - | |
Mch11g1152 | 236 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
Mch11g1152 | 236 | Gene3D | - | 78 | 153 | IPR036638 | GO:0046983(InterPro) | |
Mch11g1152 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
Mch11g1152 | 236 | CDD | bHLH_AtILR3_like | 80 | 156 | - | - | |
Mch11g1152 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 78 | 145 | IPR036638 | GO:0046983(InterPro) | |
Mch11g1152 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
Mch11g1152 | 236 | Coils | Coil | 116 | 179 | - | - | |
Mch11g1152 | 236 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1152 | Mch-Chr11:8087487 | Mch2g1024 | Mch-Chr2:6942554 | 1.48E-13 | dispersed | |
Mch10g1193 | Mch-Chr10:9333590 | Mch11g1152 | Mch-Chr11:8087487 | 1.06E-76 | transposed | |
Mch5g0087 | Mch-Chr5:559774 | Mch11g1152 | Mch-Chr11:8087487 | 2.40E-28 | transposed | |
Mch11g1152 | Mch-Chr11:8087487 | Mch2g0619 | Mch-Chr2:4246485 | 5.61E-55 | wgd | |
Mch11g1152 | Mch-Chr11:8087487 | Mch3g1203 | Mch-Chr3:15229738 | 7.87E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42621 | PF00010 | HLH | 1.10E-09 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1152 | - | - | - | 0.0 |