Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1152 ATGGTATCTCCCGAAAATCCCAATTGGTTGTTTGACTATGGTTTGATCGACAACATCCCTGTACCGGATGCGAATTTCCCAGTTACAAGTTCAAGCTTCTCGTGGGCTGTTCAACCCTTGAATGGCACCCCTGATGTCGGTGTGGAAATTGATGGATCGTTGGCAGAACCAGATGGCCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATTTAGTGCATCAAGCTCCAAAGCGTGTAGGGAGAAGTTACGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTGGGGAAGCCCAGAAACTAAAGGAATCCAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCAAACGAGAAGAATGAGCTCCGTGACGAAAAGCAGCGGCTCAAGGCAGATAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCAACCTGGCTTCTTACCTCCAGCCATCCCTACATTTGCTGCTGCTCAGAGCCAAGCTCCGGGCAATAAGTTGGTTCCTTTCATTGGTTACCACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCCGCTGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCTGTTGCT 708 49.29 MVSPENPNWLFDYGLIDNIPVPDANFPVTSSSFSWAVQPLNGTPDVGVEIDGSLAEPDGRLESGSKKRVRSDSFSASSSKACREKLRRDRLNDRFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKIKELKANEKNELRDEKQRLKADKEKLEQQVKSMHAQPGFLPPAIPTFAAAQSQAPGNKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8087487 8089897 + MC11g0951 Mch11g1152 680086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1152 236 PANTHER BHLH TRANSCRIPTION FACTOR 9 236 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Mch11g1152 236 MobiDBLite consensus disorder prediction 53 74 - -
Mch11g1152 236 FunFam Transcription factor bHLH34 66 124 - -
Mch11g1152 236 Gene3D - 78 153 IPR036638 GO:0046983(InterPro)
Mch11g1152 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Mch11g1152 236 CDD bHLH_AtILR3_like 80 156 - -
Mch11g1152 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983(InterPro)
Mch11g1152 236 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Mch11g1152 236 Coils Coil 116 179 - -
Mch11g1152 236 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1152 Mch-Chr11:8087487 Mch2g1024 Mch-Chr2:6942554 1.48E-13 dispersed
Mch10g1193 Mch-Chr10:9333590 Mch11g1152 Mch-Chr11:8087487 1.06E-76 transposed
Mch5g0087 Mch-Chr5:559774 Mch11g1152 Mch-Chr11:8087487 2.40E-28 transposed
Mch11g1152 Mch-Chr11:8087487 Mch2g0619 Mch-Chr2:4246485 5.61E-55 wgd
Mch11g1152 Mch-Chr11:8087487 Mch3g1203 Mch-Chr3:15229738 7.87E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42621 PF00010 HLH 1.10E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1152 - - - 0.0